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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:23.9 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:84.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006461Antibody HPA056108Antibody CAB005192Antibody CAB015417
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detectedLow









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.9
Samples: 246

Max nTPM: 45.8
Min nTPM: 8.1
Std nTPM: 7.5
Median nTPM: 23.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 45.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 44.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 43.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 40.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 39.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 38.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 37.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 37.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 36.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 35.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 35.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 34.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 34.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 34.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 34.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 34.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 34.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 34.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 34.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 34.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 33.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 33.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 33.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 33.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 33.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 33.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 33.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 33.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 33.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 33.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 32.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 32.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 32.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 32.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 32.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 32.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 32.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 32.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 31.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 31.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 31.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 31.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 31.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 31.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 30.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 30.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 30.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 30.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 29.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 29.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 29.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 29.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 29.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 29.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 29.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 29.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 29.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 29.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 29.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 29.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 28.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 28.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 28.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 28.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 28.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 28.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 27.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 27.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 27.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 27.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 27.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 27.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 27.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 27.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 27.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 27.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 27.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 26.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 26.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 26.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 26.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 26.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 26.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 26.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 26.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 26.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 25.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 25.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 25.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 25.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 25.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 25.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 25.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 25.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 25.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 25.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 24.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 24.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 24.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 24.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 24.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 24.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 24.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 24.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 24.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 24.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 24.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 24.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 24.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 24.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 24.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 24.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 24.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 24.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 23.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 23.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 23.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 23.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 23.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 23.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 23.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 23.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 23.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 23.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 23.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 22.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 22.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 22.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 22.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 22.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 22.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 22.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 22.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 22.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 22.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 22.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 22.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 21.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 21.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 21.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 21.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 21.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 21.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 21.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 21.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 21.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 21.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 21.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 21.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 21.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 20.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 20.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 20.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 20.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 20.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 20.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 20.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 20.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 19.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 19.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 19.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 19.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 19.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 18.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 18.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 18.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 18.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 18.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 18.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 18.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 18.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 18.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 18.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 17.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 17.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 17.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 17.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 17.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 17.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 17.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 17.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 17.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 17.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 16.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 16.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 16.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 16.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 16.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 15.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 15.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 15.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 15.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 15.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 14.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 14.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 14.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 14.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 14.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 13.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 13.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 13.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 13.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 13.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 13.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 13.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 12.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 12.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 12.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 12.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 11.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 11.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 11.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 11.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 10.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 10.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 10.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 8.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 8.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 8.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.2
Pig sample Sample description nTPM
Caudate
nTPM: 84.3
Samples: 4

Max nTPM: 99.5
Min nTPM: 59.8
Sample A Female 59.8
Sample B Female 95.1
Sample C Male 99.5
Sample D Male 82.6

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