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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1463.0 nTPM
FANTOM5:437.2 Scaled Tags Per Million
Pig:1627.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132Antibody CAB013048
Glial cells Not detectedHighMedium
Neuronal cells LowMediumNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1463.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1463.0
Samples: 246

Max nTPM: 3977.0
Min nTPM: 914.3
Std nTPM: 359.8
Median nTPM: 1391.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3977.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3435.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2822.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2627.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2599.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2541.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2518.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2397.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2353.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2332.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2189.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2020.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2017.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2009.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1942.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1940.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1920.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1919.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1904.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1889.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1882.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1853.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1834.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1815.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1810.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1797.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1794.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1789.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1769.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1725.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1712.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1709.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1701.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1698.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1686.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1676.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1667.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1664.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1662.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1660.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1656.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1650.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1626.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1625.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1625.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1623.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1620.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1616.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1615.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1614.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1612.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1608.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1608.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1607.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1605.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1600.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1598.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1597.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1592.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1578.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1577.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1554.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1548.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1548.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1543.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1543.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1535.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1529.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1529.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1526.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1526.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1520.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1520.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1515.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1509.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1502.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1500.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1499.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1499.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1498.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1497.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1497.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1496.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1495.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1490.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1486.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1484.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1484.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1481.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1472.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1470.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1469.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1465.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1465.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1465.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1462.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1462.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1461.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1460.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1459.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1452.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1448.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1446.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1446.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1445.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1443.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1438.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1437.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1427.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1426.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1425.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1425.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1421.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1417.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1415.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1414.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1412.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1405.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1400.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1398.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1398.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1396.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1394.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1388.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1387.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1385.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1374.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1373.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1370.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1368.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1365.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1365.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1364.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1359.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1355.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1355.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1353.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1351.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1350.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1349.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1347.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1344.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1344.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1343.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1340.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1339.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1337.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1337.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1336.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1335.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1329.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1327.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1324.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1324.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1322.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1321.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1320.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1318.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1316.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1315.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1311.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1311.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1309.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1308.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1303.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1301.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1299.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1298.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1296.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1289.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1286.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1286.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1286.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1285.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1284.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1279.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1278.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1277.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1273.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1264.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1263.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1259.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1259.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1259.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1257.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1257.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1254.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1253.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1251.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1251.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1247.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1246.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1244.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1239.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1238.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1236.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1236.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1235.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1235.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1219.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1216.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1216.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1211.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1207.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1207.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1206.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1204.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1203.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1199.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1196.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1192.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1191.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1188.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1186.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1185.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1181.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1178.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1177.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1175.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1170.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1165.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1164.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1154.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1152.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1146.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1145.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1145.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1139.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1138.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1126.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1105.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1103.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1093.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1088.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1066.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1054.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1048.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1037.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1034.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1021.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1020.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1008.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1000.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 985.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 960.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 914.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

437.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 437.2
FF:10164-103B2 76 years, female 437.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1627.6
Pig sample Sample description nTPM
Caudate
nTPM: 1627.6
Samples: 4

Max nTPM: 1812.7
Min nTPM: 1390.1
Sample A Female 1510.2
Sample B Female 1812.7
Sample C Male 1797.3
Sample D Male 1390.1

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