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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1946.8 nTPM
HPA Brain:1165.5 nTPM
GTEx:1946.8 nTPM
FANTOM5:457.3 Scaled Tags Per Million
Pig:2427.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1165.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 959.7
1981 Female, age 72, midline 1393.9
2194 Female, age 79, both hemispheres 978.2
2048 Male, age 55, midline 843.5
2816 Male, age 47, midline 815.2
2565 Male, age 75, midline 767.7
Cervical spinal cord, dorsal horn
nTPM: 1165.5
2296 Male, age 66, both hemispheres 1515.6
2173 Female, age 72, unknown 1514.8
2069 Male, age 47, both hemispheres 1177.5
2721 Male, age 90, both hemispheres 997.7
1877 Male, age 55, unknown 968.2
2297 Male, age 75, both hemispheres 819.2
Cervical spinal cord, ventral horn
nTPM: 963.3
2098 Female, age 72, unknown 1279.0
2068 Male, age 55, unknown 1047.9
2295 Male, age 66, both hemispheres 928.3
2809 Male, age 90, both hemispheres 877.1
2480 Male, age 75, both hemispheres 844.9
2820 Female, age 79, both hemispheres 802.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1946.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1946.8
Samples: 159

Max nTPM: 4871.9
Min nTPM: 813.3
Std nTPM: 531.4
Median nTPM: 1916.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4871.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3536.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3442.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3224.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3184.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3071.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3016.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2733.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2671.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2622.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2614.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2544.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2531.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2526.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2505.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2475.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2472.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2469.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2410.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2388.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2380.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2373.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2359.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2339.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2327.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2325.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2312.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2306.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2300.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2292.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2284.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2271.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2271.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2264.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2262.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2257.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2251.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2245.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2241.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2222.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2216.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2211.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2208.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2207.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2205.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2201.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2191.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2182.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2181.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2178.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2174.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2172.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2170.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2160.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2147.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2143.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2129.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2124.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2110.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2091.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2090.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2079.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2077.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2052.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2042.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2037.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2031.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2013.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2007.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2007.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2003.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2002.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1992.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1984.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1983.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1979.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1979.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1978.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1919.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1916.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1913.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1908.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1902.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1900.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1897.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1866.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1863.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1863.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1846.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1835.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1831.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1825.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1820.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1817.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1808.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1787.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1781.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1768.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1764.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1756.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1754.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1743.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1740.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1740.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1731.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1718.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1716.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1714.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1700.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1698.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1696.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1694.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1688.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1673.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1663.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1660.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1660.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1637.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1619.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1610.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1597.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1595.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1595.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1586.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1582.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1548.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1527.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1525.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1495.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1484.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1480.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1468.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1467.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1455.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1441.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1441.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1440.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1424.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1408.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1387.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1382.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1382.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1378.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1334.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1321.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1273.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1265.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1254.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1240.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1184.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1163.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1108.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1090.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1068.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1034.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1006.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 962.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 917.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 813.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

457.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 457.3
FF:10181-103D1 60 years, female 556.3
FF:10159-103A6 76 years, female 358.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2427.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2106.9
Samples: 4

Max nTPM: 2334.1
Min nTPM: 1934.0
Sample A Female 2057.1
Sample B Female 2102.4
Sample C Male 2334.1
Sample D Male 1934.0
Ventral spinal cord
nTPM: 2427.1
Samples: 4

Max nTPM: 2920.3
Min nTPM: 2122.7
Sample A Female 2271.9
Sample B Female 2920.3
Sample C Male 2393.3
Sample D Male 2122.7

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