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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1102.2 nTPM
HPA:1102.2 nTPM
GTEx:937.7 nTPM
FANTOM5:517.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132Antibody CAB013048
Glandular cells MediumHighLow







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1102.2
overview
Male, age 65
Small intestine sample 232
nTPM: 1230.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1135
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 890.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1152.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

937.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 937.7
Samples: 187

Max nTPM: 1624.8
Min nTPM: 509.9
Std nTPM: 213.9
Median nTPM: 915.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1624.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1472.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1447.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1422.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1404.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1387.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1363.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1362.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1350.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1345.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1341.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1339.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1335.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1328.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1296.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1285.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1264.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1260.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1258.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1253.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1252.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1232.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1231.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1218.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1201.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1184.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1177.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1162.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1160.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1159.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1157.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1154.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1153.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1143.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1141.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1139.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1125.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1117.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1116.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1112.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1110.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1102.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1102.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1082.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1077.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1071.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1064.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1060.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1036.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1032.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1031.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1031.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1027.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1019.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1016.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1013.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1009.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1006.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1006.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 995.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 995.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 995.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 993.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 990.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 987.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 986.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 976.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 976.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 969.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 966.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 964.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 963.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 961.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 959.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 953.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 952.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 947.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 942.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 942.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 939.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 937.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 937.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 935.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 932.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 931.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 929.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 925.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 924.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 923.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 923.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 918.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 917.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 916.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 915.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 912.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 909.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 904.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 904.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 901.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 901.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 897.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 895.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 891.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 889.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 888.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 884.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 881.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 880.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 878.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 877.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 871.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 870.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 869.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 860.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 860.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 857.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 854.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 854.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 852.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 844.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 838.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 835.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 831.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 830.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 826.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 820.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 820.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 811.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 807.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 807.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 806.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 805.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 804.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 804.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 803.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 798.0
GTEX-1192X-2526-SM-59868 50-59 years, male 797.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 795.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 792.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 792.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 791.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 786.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 784.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 777.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 777.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 774.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 773.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 770.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 764.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 760.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 745.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 744.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 741.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 741.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 736.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 732.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 731.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 727.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 724.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 721.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 717.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 715.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 713.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 711.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 711.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 708.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 704.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 693.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 693.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 673.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 672.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 671.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 665.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 658.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 647.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 646.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 639.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 634.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 623.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 614.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 609.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 601.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 597.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 538.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 516.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 514.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 509.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

517.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 517.2
FF:10024-101D6 15,40,85 years, mixed 517.2

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