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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:253.1 nTPM
HPA Brain:237.8 nTPM
GTEx:253.1 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Mouse:619.5 nTPM
Allen mouse:28.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Sample id Sample description nTPM
Amygdala
nTPM: 237.8
2814 Male, age 76, right hemisphere 291.9
2695 Female, age 67, right hemisphere 258.0
1987 Female, age 91, left hemisphere 228.5
2514 Male, age 75, right hemisphere 214.5
2517 Female, age 94, left hemisphere 195.9
Basal amygdala
nTPM: 195.2
2110 Male, age 80, left hemisphere 230.8
2609 Male, age 75, right hemisphere 227.3
2243 Female, age 91, right hemisphere 218.0
1955 Male, age 76, both hemispheres 207.7
2685 Female, age 94, left hemisphere 177.3
2827 Female, age 67, right hemisphere 110.3
Central amygdala
nTPM: 234.1
1905 Male, age 76, both hemispheres 293.3
2515 Male, age 75, right hemisphere 238.5
2239 Male, age 80, left hemisphere 227.4
2826 Female, age 94, left hemisphere 220.7
2701 Female, age 91, right hemisphere 190.3
Corticomedial amygdala
nTPM: 205.6
2829 Male, age 80, left hemisphere 260.5
2428 Male, age 75, right hemisphere 234.4
2242 Female, age 91, right hemisphere 218.9
2429 Female, age 94, left hemisphere 201.5
2240 Male, age 76, both hemispheres 183.3
2535 Female, age 67, right hemisphere 134.9
Lateral amygdala
nTPM: 203.8
1883 Male, age 76, both hemispheres 280.5
2516 Male, age 75, right hemisphere 237.3
2534 Female, age 94, left hemisphere 232.7
2255 Female, age 91, right hemisphere 187.9
2256 Male, age 80, left hemisphere 154.6
2830 Female, age 67, right hemisphere 129.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 253.1
Samples: 152

Max nTPM: 571.1
Min nTPM: 106.5
Std nTPM: 79.5
Median nTPM: 241.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 571.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 528.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 505.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 430.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 422.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 414.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 413.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 406.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 404.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 396.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 370.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 363.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 359.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 353.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 351.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 350.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 348.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 346.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 345.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 345.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 342.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 332.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 330.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 329.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 325.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 318.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 312.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 311.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 309.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 307.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 306.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 305.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 304.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 298.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 294.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 292.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 291.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 291.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 289.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 288.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 287.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 287.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 284.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 282.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 281.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 280.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 278.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 278.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 278.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 277.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 277.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 275.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 272.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 272.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 271.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 269.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 268.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 268.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 267.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 267.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 266.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 265.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 264.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 264.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 264.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 263.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 261.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 258.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 251.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 248.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 246.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 245.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 245.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 243.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 242.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 240.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 239.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 238.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 237.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 236.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 235.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 234.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 234.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 232.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 231.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 229.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 228.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 226.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 225.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 225.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 222.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 221.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 220.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 220.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 218.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 217.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 216.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 216.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 215.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 215.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 214.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 212.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 211.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 211.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 208.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 208.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 206.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 201.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 201.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 200.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 200.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 199.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 197.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 196.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 189.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 188.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 185.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 185.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 184.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 183.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 182.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 181.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 181.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 176.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 176.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 176.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 175.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 171.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 167.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 166.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 165.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 164.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 161.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 160.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 158.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 155.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 148.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 143.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 143.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 139.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 129.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 106.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.9
FF:10151-102I7 76 years, female 48.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 619.6
Samples: 4

Max nTPM: 648.2
Min nTPM: 599.5
Sample A Male 648.2
Sample B Male 608.9
Sample C Female 621.6
Sample D Female 599.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

28.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.8
513469 Antisense, RP_040810_01_F11, Mouse strain C57BL/6J (56 days, male) 28.8

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