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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:407.9 nTPM
GTEx:407.9 nTPM
FANTOM5:47.5 Scaled Tags Per Million
Mouse:1490.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 407.9
Samples: 105

Max nTPM: 717.5
Min nTPM: 265.6
Std nTPM: 96.4
Median nTPM:
218_1 71 years, female 717.5
386_1 76 years, male 660.4
6_1 73 years, female 653.4
375_1 74 years, female 650.0
347_1 72 years, male 649.4
379_1 60 years, male 647.0
322_1 76 years, male 609.3
307_1 66 years, female 602.1
42_1 85 years, male 570.5
145_1 84 years, male 570.0
35_1 74 years, female 552.0
173_1 67 years, male 536.6
447_1 81 years, male 532.8
316_1 62 years, male 528.9
4_1 88 years, female 503.9
17_1 71 years, male 495.0
117_1 61 years, male 484.4
2_1 77 years, female 480.5
237_1 82 years, male 470.2
377_1 82 years, female 463.8
321_1 62 years, female 460.7
18_1 88 years, male 456.3
384_1 83 years, male 455.4
319_1 81 years, male 455.2
120_1 70 years, female 447.9
518_1 75 years, female 447.9
491_1 89 years, female 446.4
139_1 64 years, female 446.0
350_1 84 years, female 443.8
506_1 65 years, male 442.2
308_1 70 years, female 440.9
490_1 67 years, female 440.5
311_1 78 years, male 438.6
495_1 57 years, female 435.3
318_1 68 years, male 433.8
354_1 81 years, female 429.9
126_1 63 years, male 426.7
119_1 70 years, female 425.4
243_1 75 years, male 424.7
43_1 64 years, female 422.2
142_1 61 years, female 416.3
324_1 76 years, male 412.1
153_1 70 years, female 407.2
389_1 86 years, female 403.4
353_1 82 years, female 401.2
405_1 91 years, male 400.3
315_1 62 years, female 400.0
115_1 83 years, male 397.9
41_1 94 years, female 397.8
317_1 60 years, male 397.7
396_1 62 years, male 395.0
526_1 61 years, male 392.7
351_1 91 years, male 389.9
291_1 76 years, male 388.2
348_1 84 years, male 387.7
295_1 61 years, female 386.8
81_1 67 years, male 385.6
355_1 70 years, female 381.9
320_1 89 years, female 377.2
452_1 88 years, female 377.2
501_1 88 years, male 377.0
99_1 64 years, male 372.0
376_1 75 years, female 369.7
177_1 74 years, male 366.7
163_1 78 years, male 358.7
335_1 73 years, female 356.2
313_1 79 years, female 353.5
468_1 89 years, male 353.0
172_1 72 years, female 351.1
404_1 82 years, female 351.0
425_1 59 years, female 350.3
352_1 62 years, male 346.8
109_1 81 years, female 346.1
217_1 76 years, male 343.9
189_1 76 years, male 339.0
246_1 77 years, male 338.8
265_1 87 years, male 337.8
254_1 77 years, female 334.5
349_1 83 years, male 332.4
499_1 55 years, female 331.6
415_1 77 years, female 328.1
293_1 68 years, female 326.6
480_1 63 years, male 326.5
406_1 79 years, male 325.1
356_1 87 years, female 324.0
264_1 73 years, female 323.9
162_1 79 years, female 320.6
292_1 71 years, male 320.5
89_1 63 years, male 318.8
413_1 59 years, female 315.8
414_1 84 years, female 315.8
466_1 57 years, female 312.4
266_1 85 years, male 311.4
9_1 66 years, female 308.9
286_1 68 years, female 306.8
314_1 67 years, male 306.4
503_1 68 years, male 305.6
229_1 69 years, female 302.9
517_1 88 years, male 301.9
251_1 78 years, male 298.9
32_1 67 years, male 297.4
137_1 83 years, male 289.6
394_1 75 years, female 287.8
288_1 66 years, female 287.1
149_1 88 years, male 265.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 47.5
FF:10030-101E3 24-65 years, mixed 47.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1490.7
Mouse sample Sample description nTPM
Retina
nTPM: 1490.7
Samples: 4

Max nTPM: 1650.0
Min nTPM: 1388.1
Sample A Male 1504.6
Sample B Male 1420.0
Sample C Female 1650.0
Sample D Female 1388.1

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