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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1547.8 nTPM
HPA:688.3 nTPM
GTEx:1547.8 nTPM
FANTOM5:267.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003371
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

688.3
overview
Male, age 65
Small intestine sample 232
nTPM: 846.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 660.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 610.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 636.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1547.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1547.8
Samples: 187

Max nTPM: 3748.7
Min nTPM: 791.6
Std nTPM: 457.2
Median nTPM: 1473.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3748.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3029.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2966.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2760.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2574.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2573.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2567.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2483.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2474.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2428.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2407.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2336.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2334.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2264.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 2260.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2219.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2216.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2206.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2191.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2183.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2114.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2088.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2050.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2049.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2043.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2016.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2001.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1970.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1970.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1952.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1931.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1905.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1905.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1899.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1894.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1860.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1856.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1836.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1827.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1825.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1823.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1818.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1817.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1813.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1812.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1802.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1802.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1771.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1760.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1755.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1751.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1740.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1728.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1701.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1696.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1691.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1685.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1679.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1674.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1666.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1665.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1661.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 1655.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1651.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1640.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1627.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1611.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1608.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1607.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1605.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1605.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1603.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1600.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1595.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1591.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1591.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1580.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1571.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1571.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1570.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1565.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1561.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1553.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1547.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1545.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1544.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1533.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1531.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1508.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1494.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1492.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1489.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1475.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1473.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1472.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1449.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1428.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1426.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1421.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1415.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1415.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1412.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1408.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1399.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1398.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1395.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1388.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1383.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1380.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1375.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1371.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1368.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1365.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1353.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1339.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1337.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1332.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1329.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1329.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1307.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1293.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1293.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1283.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1283.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1279.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1279.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1274.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1271.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1270.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1270.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1259.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1256.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1256.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1253.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1251.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1228.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1217.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1214.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1213.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1208.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1203.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1201.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1197.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1190.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1190.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1188.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1186.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1186.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1180.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1162.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1159.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1157.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1156.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1147.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1145.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1139.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1127.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1118.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1115.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1114.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1113.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1100.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1096.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1095.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1082.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1078.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1064.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 1058.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1053.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1053.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1050.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1048.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1024.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1009.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1007.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1004.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1003.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 995.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 990.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 990.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 969.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 937.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 934.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 927.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 902.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 873.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 791.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 267.3
FF:10024-101D6 15,40,85 years, mixed 267.3

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