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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1840.5 nTPM
GTEx:1840.5 nTPM
FANTOM5:1144.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003371
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1840.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1840.5
Samples: 156

Max nTPM: 6218.6
Min nTPM: 913.9
Std nTPM: 590.8
Median nTPM: 1748.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 6218.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3854.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3487.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3281.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3011.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2906.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2849.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2734.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2707.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2682.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2542.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2534.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2532.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2509.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2462.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2434.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2379.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2365.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2365.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2351.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2312.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2271.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2227.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2222.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2221.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2216.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2213.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2194.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2138.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2123.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2112.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2111.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2093.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2075.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2067.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2067.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2066.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2056.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2052.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2045.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2041.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2038.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2025.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2022.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2022.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2008.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1997.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1997.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1994.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1992.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1990.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1986.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1945.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1929.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1924.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1908.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1903.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1897.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1897.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1894.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1892.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1876.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1872.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1849.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1821.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1820.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1819.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1815.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1809.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1807.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1786.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1784.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1783.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1782.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1777.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1771.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1754.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1753.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1743.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1738.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1729.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1728.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1721.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1716.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1711.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1708.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1707.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1698.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1692.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1691.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1677.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1669.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1662.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1655.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1655.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1651.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1651.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1646.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1627.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1624.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1617.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1611.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1603.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1592.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1584.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1575.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1575.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1557.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1557.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1548.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1530.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1523.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1520.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1516.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1513.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1512.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1511.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1498.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1494.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1476.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1460.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1454.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1448.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1436.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1431.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1430.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1420.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1419.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1418.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1415.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1407.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1392.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1383.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1367.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1359.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1349.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1326.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1291.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1283.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1282.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1266.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1266.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1239.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1235.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1218.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1186.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1183.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1170.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1134.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1096.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1091.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1088.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1077.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1020.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1013.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 913.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1144.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1144.5
FF:10204-103F6 68 years, female 1144.5

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