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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

94.904
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.2 nTPM
HPA Brain:554.1 nTPM
GTEx:241.2 nTPM
FANTOM5:1086.3 Scaled Tags Per Million
Pig:473.0 nTPM
Mouse:91.2 nTPM
Allen mouse:2.4 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB005079
Amygdala mean intensity 94.904
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 62.810
Basal medial amygdaloid nucleus 61.485
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 50.280
Cortical amygdala 78.445
Central amygdala 49.324
Medial amygdaloid nucleus 76.180

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

554.1
Sample id Sample description nTPM
Amygdala
nTPM: 554.1
1987 Female, age 91, left hemisphere 750.1
2517 Female, age 94, left hemisphere 611.5
2514 Male, age 75, right hemisphere 549.8
2814 Male, age 76, right hemisphere 440.7
2695 Female, age 67, right hemisphere 418.5
Basal amygdala
nTPM: 409.3
2609 Male, age 75, right hemisphere 577.2
2110 Male, age 80, left hemisphere 505.1
1955 Male, age 76, both hemispheres 472.9
2243 Female, age 91, right hemisphere 403.5
2685 Female, age 94, left hemisphere 376.7
2827 Female, age 67, right hemisphere 120.3
Central amygdala
nTPM: 507.1
2515 Male, age 75, right hemisphere 597.1
2826 Female, age 94, left hemisphere 587.2
2239 Male, age 80, left hemisphere 512.6
1905 Male, age 76, both hemispheres 467.4
2701 Female, age 91, right hemisphere 371.0
Corticomedial amygdala
nTPM: 462.6
2242 Female, age 91, right hemisphere 579.0
2428 Male, age 75, right hemisphere 563.6
2829 Male, age 80, left hemisphere 536.9
2240 Male, age 76, both hemispheres 453.4
2429 Female, age 94, left hemisphere 450.8
2535 Female, age 67, right hemisphere 191.8
Lateral amygdala
nTPM: 411.7
2516 Male, age 75, right hemisphere 580.0
2256 Male, age 80, left hemisphere 499.2
2534 Female, age 94, left hemisphere 472.1
1883 Male, age 76, both hemispheres 443.3
2255 Female, age 91, right hemisphere 343.5
2830 Female, age 67, right hemisphere 131.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 241.2
Samples: 152

Max nTPM: 802.7
Min nTPM: 5.9
Std nTPM: 149.7
Median nTPM: 221.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 802.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 716.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 604.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 586.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 578.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 565.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 531.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 525.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 513.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 499.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 482.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 481.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 453.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 451.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 447.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 428.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 428.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 427.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 413.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 408.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 406.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 399.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 387.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 380.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 379.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 376.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 374.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 372.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 371.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 369.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 366.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 365.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 349.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 346.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 343.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 341.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 335.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 332.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 331.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 331.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 328.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 323.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 320.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 319.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 318.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 314.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 314.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 313.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 301.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 300.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 298.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 296.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 283.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 282.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 280.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 275.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 271.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 269.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 266.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 257.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 256.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 255.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 252.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 251.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 243.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 242.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 240.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 237.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 230.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 229.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 227.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 225.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 223.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 220.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 213.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 207.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 199.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 195.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 186.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 183.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 183.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 183.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 182.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 177.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 176.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 173.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 173.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 170.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 168.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 164.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 163.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 160.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 157.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 157.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 151.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 150.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 150.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 145.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 137.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 130.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 128.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 126.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 125.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 125.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 123.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 121.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 118.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 113.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 105.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 98.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 94.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 89.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 80.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 76.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 75.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 70.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 65.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 61.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 58.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 55.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 51.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 30.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 19.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 12.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 8.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1086.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1086.3
FF:10151-102I7 76 years, female 1086.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

473.0
Pig sample Sample description nTPM
Amygdala
nTPM: 473.0
Samples: 4

Max nTPM: 549.9
Min nTPM: 407.2
Sample A Female 417.6
Sample B Female 517.4
Sample C Male 407.2
Sample D Male 549.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 91.2
Samples: 4

Max nTPM: 102.1
Min nTPM: 86.6
Sample A Male 87.8
Sample B Male 88.2
Sample C Female 86.6
Sample D Female 102.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
77454660 Antisense, RP_070129_01_C02, Mouse strain C57BL/6J (56 days, male) 2.9
79556722 Antisense, RP_071204_01_E02, Mouse strain C57BL/6J (56 days, male) 2.4
108 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 1.9
109 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 1.1

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