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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:251.5 nTPM
FANTOM5:834.2 Scaled Tags Per Million
Pig:361.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014784Antibody CAB005079Antibody CAB058689
Glial cells MediumMediumMedium
Neuronal cells Not detectedNot detectedNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 251.5
Samples: 246

Max nTPM: 695.0
Min nTPM: 23.7
Std nTPM: 107.8
Median nTPM: 234.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 695.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 584.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 544.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 538.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 511.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 499.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 490.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 481.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 480.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 478.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 473.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 458.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 450.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 438.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 429.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 429.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 426.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 425.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 421.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 420.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 406.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 400.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 396.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 395.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 388.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 387.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 387.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 380.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 378.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 378.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 376.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 376.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 374.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 373.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 372.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 368.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 366.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 362.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 359.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 357.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 355.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 352.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 351.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 349.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 346.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 342.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 341.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 339.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 337.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 336.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 335.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 335.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 333.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 333.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 328.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 326.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 326.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 325.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 324.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 320.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 319.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 318.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 314.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 310.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 310.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 307.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 307.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 307.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 306.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 304.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 302.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 295.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 293.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 290.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 285.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 284.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 282.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 282.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 282.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 280.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 280.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 280.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 280.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 280.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 279.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 279.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 278.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 276.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 275.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 275.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 273.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 272.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 272.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 271.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 270.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 270.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 269.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 269.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 268.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 268.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 264.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 263.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 262.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 261.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 261.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 261.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 259.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 258.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 257.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 257.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 255.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 255.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 251.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 251.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 250.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 250.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 242.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 241.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 240.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 239.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 239.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 237.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 235.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 233.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 232.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 232.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 232.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 231.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 231.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 230.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 229.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 227.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 223.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 220.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 220.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 220.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 220.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 219.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 218.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 218.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 218.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 217.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 217.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 216.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 213.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 213.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 213.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 213.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 209.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 208.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 208.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 207.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 205.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 205.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 205.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 205.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 204.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 204.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 200.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 199.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 199.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 199.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 199.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 197.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 196.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 196.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 195.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 193.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 190.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 189.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 188.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 188.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 186.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 186.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 185.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 185.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 183.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 178.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 178.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 178.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 177.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 175.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 175.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 174.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 172.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 169.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 168.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 168.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 164.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 164.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 164.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 162.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 161.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 159.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 158.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 158.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 157.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 157.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 155.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 153.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 152.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 149.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 149.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 148.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 146.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 146.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 143.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 142.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 142.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 142.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 140.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 139.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 138.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 137.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 136.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 136.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 135.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 130.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 130.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 129.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 129.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 127.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 124.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 122.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 121.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 121.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 110.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 107.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 100.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 96.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 88.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 86.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 81.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 63.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 62.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 57.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 50.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 26.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 23.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

834.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 834.2
FF:10164-103B2 76 years, female 834.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Pig sample Sample description nTPM
Caudate
nTPM: 361.3
Samples: 4

Max nTPM: 398.8
Min nTPM: 297.2
Sample A Female 372.4
Sample B Female 297.2
Sample C Male 398.8
Sample D Male 376.8

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