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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
552.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 46.3
2090
Male, age 80, both hemispheres
52.2
2301
Female, age 85, both hemispheres
51.9
2188
Female, age 91, both hemispheres
48.0
1984
Male, age 76, both hemispheres
33.2
Dorsal cochlear nucleus nTPM: 96.9
2187
Female, age 91, both hemispheres
248.3
2058
Male, age 76, both hemispheres
129.3
2370
Male, age 61, both hemispheres
68.1
2378
Male, age 80, both hemispheres
24.3
2802
Male, age 74, right hemisphere
14.6
Dorsal tegmental nucleus nTPM: 109.1
2083
Male, age 80, both hemispheres
166.1
2358
Male, age 61, both hemispheres
108.8
2326
Male, age 74, both hemispheres
85.3
1936
Male, age 76, left hemisphere
76.0
Dorsolateral tegmental area nTPM: 131.1
2751
Female, age 85, both hemispheres
182.8
2654
Male, age 80, both hemispheres
156.5
2141
Male, age 76, both hemispheres
144.6
2360
Male, age 74, both hemispheres
124.5
2337
Male, age 61, both hemispheres
46.8
Kolliker-Fuse nucleus nTPM: 68.2
2163
Male, age 80, both hemispheres
104.5
2315
Male, age 76, right hemisphere
74.0
2793
Female, age 91, left hemisphere
26.0
Lateral lemniscal nuclei nTPM: 38.1
2453
Male, age 74, right hemisphere
48.6
2169
Male, age 76, both hemispheres
41.2
2746
Female, age 85, left hemisphere
40.5
2036
Male, age 80, both hemispheres
39.0
2320
Female, age 91, left hemisphere
21.2
Lateral parabrachial nucleus nTPM: 78.4
2790
Male, age 61, both hemispheres
127.1
2013
Male, age 80, both hemispheres
96.8
2139
Female, age 85, right hemisphere
55.4
2792
Male, age 76, both hemispheres
34.3
Lateral vestibular nucleus nTPM: 74.2
2184
Male, age 76, both hemispheres
76.9
2311
Male, age 80, both hemispheres
71.5
Locus coeruleus nTPM: 552.9
2123
Female, age 91, both hemispheres
1180.5
2720
Male, age 74, both hemispheres
844.0
2788
Male, age 74, unknown
470.2
1980
Male, age 76, both hemispheres
430.0
2162
Male, age 80, both hemispheres
409.3
2014
Male, age 55, unknown
331.6
2317
Female, age 72, unknown
204.6
Medial parabrachial nucleus nTPM: 158.9
2170
Female, age 91, both hemispheres
338.2
2786
Male, age 76, both hemispheres
128.3
2854
Male, age 80, both hemispheres
118.5
2463
Female, age 85, right hemisphere
106.2
2156
Male, age 61, both hemispheres
103.5
Medial periolivary nuclei nTPM: 43.4
2791
Male, age 74, right hemisphere
66.2
2171
Female, age 85, both hemispheres
50.1
2063
Male, age 76, both hemispheres
47.1
2458
Female, age 91, both hemispheres
27.9
2081
Male, age 80, both hemispheres
25.7
Motor facial nucleus nTPM: 63.4
2126
Male, age 61, both hemispheres
137.3
2365
Male, age 74, right hemisphere
61.2
2697
Female, age 85, both hemispheres
56.2
2062
Male, age 76, both hemispheres
49.9
2327
Male, age 80, both hemispheres
47.6
2795
Female, age 91, both hemispheres
28.1
Motor trigeminal nucleus nTPM: 63.6
2335
Male, age 61, both hemispheres
118.1
2309
Male, age 76, both hemispheres
79.8
2321
Female, age 91, both hemispheres
57.8
2079
Male, age 80, both hemispheres
35.4
2560
Male, age 74, both hemispheres
26.8
Nuclei of the trapezoid body nTPM: 48.3
2159
Male, age 61, both hemispheres
85.0
2735
Female, age 85, both hemispheres
58.2
1983
Male, age 76, both hemispheres
40.1
2166
Male, age 80, both hemispheres
37.8
2368
Female, age 91, both hemispheres
20.6
Nucleus raphe magnus nTPM: 69.5
2160
Male, age 61, both hemispheres
143.1
2455
Male, age 74, both hemispheres
92.8
2172
Female, age 85, both hemispheres
71.5
2328
Male, age 80, both hemispheres
42.3
2051
Male, age 76, both hemispheres
36.9
2459
Female, age 91, both hemispheres
30.6
Paramedian reticular nucleus nTPM: 196.0
2313
Male, age 61, both hemispheres
300.9
2057
Male, age 80, both hemispheres
192.9
2050
Female, age 85, both hemispheres
160.3
2052
Male, age 76, both hemispheres
129.9
Pedunculopontine tegmental nucleus nTPM: 206.0
2334
Male, age 80, both hemispheres
345.0
1921
Female, age 85, both hemispheres
166.0
2338
Male, age 61, both hemispheres
106.8
Pontine nuclei nTPM: 56.5
2727
Male, age 61, right hemisphere
118.4
1863
Male, age 55, unknown
74.7
2109
Female, age 72, unknown
67.3
2454
Male, age 74, left hemisphere
56.8
2787
Female, age 85, both hemispheres
56.1
1968
Male, age 76, left hemisphere
31.2
2115
Male, age 80, left hemisphere
27.0
2319
Female, age 91, both hemispheres
20.7
Pontine raphe nucleus nTPM: 202.7
2853
Male, age 76, midline
248.8
2122
Female, age 85, midline
156.6
Posteroventral cochlear nucleus nTPM: 104.3
2070
Male, age 76, both hemispheres
266.4
2752
Female, age 85, both hemispheres
180.9
2371
Male, age 61, both hemispheres
56.2
2341
Male, age 80, both hemispheres
11.9
2135
Female, age 91, both hemispheres
6.2
Principal sensory trigeminal nucleus nTPM: 58.9
2158
Male, age 61, both hemispheres
100.6
2324
Male, age 76, both hemispheres
64.8
2008
Male, age 80, left hemisphere
47.5
2367
Female, age 91, left hemisphere
22.8
Reticular pontine nucleus, caudal nTPM: 43.4
2559
Male, age 74, both hemispheres
51.0
2092
Male, age 76, both hemispheres
47.9
2332
Male, age 80, right hemisphere
42.7
2457
Female, age 91, both hemispheres
32.1
Reticular pontine nucleus, oral nTPM: 108.8
1939
Male, age 80, both hemispheres
195.4
2012
Female, age 85, both hemispheres
113.1
2167
Male, age 76, both hemispheres
111.6
2361
Male, age 74, both hemispheres
104.3
2366
Female, age 91, both hemispheres
19.5
Reticulotegmental nucleus nTPM: 87.4
2322
Female, age 91, both hemispheres
93.3
2325
Male, age 76, both hemispheres
91.3
2333
Male, age 80, both hemispheres
84.1
2452
Male, age 74, both hemispheres
80.9
Spinal trigeminal nucleus, oral nTPM: 119.4
2737
Female, age 85, both hemispheres
131.4
2164
Male, age 80, both hemispheres
127.7
1978
Male, age 76, both hemispheres
99.2
Subcoeruleus area nTPM: 233.0
2323
Female, age 91, left hemisphere
711.1
1958
Male, age 80, both hemispheres
164.8
2451
Male, age 74, both hemispheres
142.3
2369
Female, age 85, left hemisphere
109.4
2089
Male, age 76, left hemisphere
37.4
Superior olive nTPM: 49.9
1875
Female, age 85, both hemispheres
80.5
2364
Male, age 74, right hemisphere
71.7
2329
Male, age 80, right hemisphere
35.4
2020
Male, age 76, both hemispheres
32.5
2561
Female, age 91, both hemispheres
29.1
Ventral periolivary nuclei nTPM: 43.9
2130
Female, age 85, both hemispheres
57.4
2165
Male, age 80, both hemispheres
48.6
2023
Male, age 76, both hemispheres
34.9
2794
Female, age 91, left hemisphere
34.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 76.0
2359
Male, age 61, both hemispheres
176.4
2840
Female, age 85, both hemispheres
112.8
2449
Male, age 74, both hemispheres
67.8
1959
Male, age 76, both hemispheres
41.9
2161
Male, age 80, both hemispheres
37.7
2456
Female, age 91, both hemispheres
19.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
303.2
Pig sample
Sample description
nTPM
Pons nTPM: 303.2
Samples: 4
Max nTPM: 473.5
Min nTPM: 116.9
Sample A
Female
116.9
Sample B
Female
361.3
Sample C
Male
473.5
Sample D
Male
261.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
