We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SYNPO
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SYNPO
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.3 nTPM
HPA Brain:287.4 nTPM
GTEx:115.3 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:109.0 nTPM
Mouse:73.7 nTPM
Allen mouse:16.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.4
Sample id Sample description nTPM
Amygdala
nTPM: 109.8
2517 Female, age 94, left hemisphere 156.1
1987 Female, age 91, left hemisphere 134.5
2514 Male, age 75, right hemisphere 114.3
2814 Male, age 76, right hemisphere 103.1
2695 Female, age 67, right hemisphere 41.3
Basal amygdala
nTPM: 287.4
2243 Female, age 91, right hemisphere 504.5
2827 Female, age 67, right hemisphere 290.4
2685 Female, age 94, left hemisphere 279.0
2110 Male, age 80, left hemisphere 269.0
2609 Male, age 75, right hemisphere 250.5
1955 Male, age 76, both hemispheres 131.2
Central amygdala
nTPM: 149.8
2826 Female, age 94, left hemisphere 223.5
2239 Male, age 80, left hemisphere 216.9
2515 Male, age 75, right hemisphere 122.1
2701 Female, age 91, right hemisphere 95.7
1905 Male, age 76, both hemispheres 90.8
Corticomedial amygdala
nTPM: 265.1
2829 Male, age 80, left hemisphere 399.9
2242 Female, age 91, right hemisphere 384.8
2535 Female, age 67, right hemisphere 266.0
2428 Male, age 75, right hemisphere 225.8
2429 Female, age 94, left hemisphere 183.8
2240 Male, age 76, both hemispheres 130.5
Lateral amygdala
nTPM: 158.5
2534 Female, age 94, left hemisphere 246.3
2256 Male, age 80, left hemisphere 201.2
2255 Female, age 91, right hemisphere 157.3
2830 Female, age 67, right hemisphere 152.9
1883 Male, age 76, both hemispheres 108.4
2516 Male, age 75, right hemisphere 85.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.3
Samples: 152

Max nTPM: 356.2
Min nTPM: 12.1
Std nTPM: 64.3
Median nTPM: 104.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 356.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 291.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 271.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 268.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 226.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 223.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 216.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 215.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 214.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 213.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 212.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 210.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 210.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 204.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 203.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 200.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 198.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 193.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 190.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 190.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 189.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 186.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 185.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 185.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 184.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 182.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 180.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 176.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 172.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 171.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 170.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 168.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 167.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 162.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 158.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 156.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 154.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 152.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 151.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 151.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 150.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 150.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 150.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 147.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 147.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 144.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 144.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 142.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 142.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 139.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 137.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 137.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 129.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 127.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 127.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 123.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 123.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 120.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 111.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 109.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 106.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 104.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 103.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 100.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 95.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 89.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 88.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 88.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 86.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 85.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 84.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 82.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 77.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 71.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 70.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 70.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 67.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 67.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 64.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 64.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 63.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 63.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 62.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 61.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 57.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 56.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 54.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 53.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 51.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 51.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 51.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 51.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 49.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 46.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 45.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 43.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 41.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 37.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 37.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 36.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 33.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 32.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 32.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 21.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 12.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 12.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.6
FF:10151-102I7 76 years, female 34.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.0
Pig sample Sample description nTPM
Amygdala
nTPM: 109.0
Samples: 4

Max nTPM: 151.9
Min nTPM: 71.3
Sample A Female 151.9
Sample B Female 71.3
Sample C Male 117.5
Sample D Male 95.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.8
Samples: 4

Max nTPM: 78.4
Min nTPM: 70.0
Sample A Male 72.1
Sample B Male 78.4
Sample C Female 74.5
Sample D Female 70.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.3
73573223 Antisense, RP_051121_03_E06, Mouse strain C57BL/6J (56 days, male) 16.3
74640881 Antisense, RP_051121_03_E06, Mouse strain C57BL/6J (56 days, male) 13.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org