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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:742.2 nTPM
HPA Brain:514.8 nTPM
GTEx:742.2 nTPM
FANTOM5:679.3 Scaled Tags Per Million
Mouse:1260.7 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

514.8
Sample id Sample description nTPM
Amygdala
nTPM: 514.8
2814 Male, age 76, right hemisphere 610.5
1987 Female, age 91, left hemisphere 535.8
2514 Male, age 75, right hemisphere 511.6
2695 Female, age 67, right hemisphere 471.6
2517 Female, age 94, left hemisphere 444.5
Basal amygdala
nTPM: 484.4
2110 Male, age 80, left hemisphere 551.7
2243 Female, age 91, right hemisphere 546.4
1955 Male, age 76, both hemispheres 496.4
2685 Female, age 94, left hemisphere 472.9
2609 Male, age 75, right hemisphere 459.9
2827 Female, age 67, right hemisphere 379.2
Central amygdala
nTPM: 501.5
2826 Female, age 94, left hemisphere 590.3
1905 Male, age 76, both hemispheres 548.9
2239 Male, age 80, left hemisphere 518.3
2515 Male, age 75, right hemisphere 452.6
2701 Female, age 91, right hemisphere 397.6
Corticomedial amygdala
nTPM: 483.8
2829 Male, age 80, left hemisphere 541.6
2242 Female, age 91, right hemisphere 530.0
2240 Male, age 76, both hemispheres 487.0
2428 Male, age 75, right hemisphere 469.2
2429 Female, age 94, left hemisphere 468.7
2535 Female, age 67, right hemisphere 406.3
Lateral amygdala
nTPM: 479.8
2534 Female, age 94, left hemisphere 597.5
1883 Male, age 76, both hemispheres 582.0
2516 Male, age 75, right hemisphere 448.0
2256 Male, age 80, left hemisphere 446.6
2255 Female, age 91, right hemisphere 413.0
2830 Female, age 67, right hemisphere 391.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

742.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 742.2
Samples: 152

Max nTPM: 1670.6
Min nTPM: 384.6
Std nTPM: 197.9
Median nTPM: 698.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1670.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1449.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1341.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1326.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1208.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1138.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1129.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1126.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1089.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1088.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1072.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1068.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1009.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1007.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 994.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 987.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 984.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 963.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 948.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 940.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 930.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 929.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 924.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 922.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 917.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 914.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 902.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 900.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 894.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 878.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 875.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 863.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 861.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 849.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 840.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 829.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 826.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 823.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 822.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 817.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 815.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 815.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 812.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 808.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 795.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 786.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 783.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 782.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 778.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 775.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 770.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 768.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 763.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 763.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 763.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 763.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 753.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 753.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 752.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 752.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 750.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 747.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 742.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 742.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 736.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 734.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 719.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 717.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 715.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 714.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 712.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 705.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 703.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 702.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 701.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 698.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 698.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 696.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 694.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 686.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 685.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 681.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 680.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 680.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 677.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 676.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 673.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 671.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 670.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 670.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 670.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 669.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 667.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 662.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 658.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 658.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 653.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 652.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 650.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 643.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 640.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 639.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 637.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 637.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 635.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 633.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 626.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 623.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 620.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 619.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 618.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 614.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 614.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 610.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 609.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 609.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 606.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 598.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 594.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 590.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 589.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 585.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 585.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 581.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 572.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 567.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 566.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 564.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 562.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 560.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 558.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 556.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 555.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 551.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 549.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 549.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 547.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 546.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 544.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 543.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 541.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 540.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 538.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 527.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 520.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 510.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 506.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 460.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 458.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 458.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 442.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 384.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

679.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 679.3
FF:10151-102I7 76 years, female 679.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1260.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 1260.8
Samples: 4

Max nTPM: 1282.7
Min nTPM: 1215.1
Sample A Male 1282.7
Sample B Male 1270.0
Sample C Female 1275.2
Sample D Female 1215.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
70719651 Antisense, RP_050426_02_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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