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TRMT112
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:80.8 nTPM
HPA Brain:56.9 nTPM
GTEx:80.8 nTPM
FANTOM5:68.3 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:34.9 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.9
Sample id Sample description nTPM
Amygdala
nTPM: 56.9
2695 Female, age 67, right hemisphere 64.9
2814 Male, age 76, right hemisphere 64.5
1987 Female, age 91, left hemisphere 55.7
2514 Male, age 75, right hemisphere 54.5
2517 Female, age 94, left hemisphere 45.1
Basal amygdala
nTPM: 42.3
1955 Male, age 76, both hemispheres 49.6
2609 Male, age 75, right hemisphere 47.3
2110 Male, age 80, left hemisphere 45.2
2827 Female, age 67, right hemisphere 41.1
2685 Female, age 94, left hemisphere 36.2
2243 Female, age 91, right hemisphere 34.1
Central amygdala
nTPM: 50.4
2826 Female, age 94, left hemisphere 66.0
1905 Male, age 76, both hemispheres 53.1
2701 Female, age 91, right hemisphere 46.1
2239 Male, age 80, left hemisphere 43.8
2515 Male, age 75, right hemisphere 43.2
Corticomedial amygdala
nTPM: 37.8
2829 Male, age 80, left hemisphere 43.3
2428 Male, age 75, right hemisphere 41.3
2429 Female, age 94, left hemisphere 37.8
2240 Male, age 76, both hemispheres 37.0
2535 Female, age 67, right hemisphere 34.6
2242 Female, age 91, right hemisphere 32.7
Lateral amygdala
nTPM: 45.5
1883 Male, age 76, both hemispheres 51.9
2830 Female, age 67, right hemisphere 50.9
2534 Female, age 94, left hemisphere 50.2
2516 Male, age 75, right hemisphere 48.9
2256 Male, age 80, left hemisphere 36.4
2255 Female, age 91, right hemisphere 34.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 80.8
Samples: 152

Max nTPM: 214.1
Min nTPM: 14.4
Std nTPM: 24.3
Median nTPM: 76.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 214.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 169.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 154.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 153.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 141.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 139.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 130.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 119.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 117.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 114.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 110.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 109.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 109.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 106.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 105.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 100.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 100.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 98.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 93.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 93.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 92.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 91.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 91.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 90.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 90.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 89.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 89.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 89.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 86.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 86.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 85.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 85.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 85.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 84.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 83.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 83.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 82.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 81.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 80.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 80.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 79.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 79.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 76.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 76.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 76.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 76.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 75.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 75.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 75.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 75.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 75.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 74.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 74.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 73.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 73.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 73.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 73.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 73.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 72.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 72.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 71.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 70.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 70.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 68.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 68.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 68.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 67.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 67.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 67.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 67.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 67.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 66.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 66.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 66.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 66.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 65.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 65.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 65.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 63.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 61.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 61.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 59.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 58.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 57.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 57.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 55.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 53.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 51.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 51.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 46.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 43.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 14.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.3
FF:10151-102I7 76 years, female 68.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.6
Pig sample Sample description nTPM
Amygdala
nTPM: 68.5
Samples: 4

Max nTPM: 98.4
Min nTPM: 46.2
Sample A Female 98.4
Sample B Female 74.8
Sample C Male 54.7
Sample D Male 46.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 34.9
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.3
Sample A Male 38.3
Sample B Male 34.1
Sample C Female 36.0
Sample D Female 31.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
71654121 Antisense, RP_050927_03_D04, Mouse strain C57BL/6J (56 days, male) 1.1

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