MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.7 nTPM
HPA Brain:77.9 nTPM
GTEx:82.7 nTPM
FANTOM5:107.0 Scaled Tags Per Million
Pig:118.2 nTPM
Mouse:34.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.9
2411 Female, age 72, unknown 62.7
1870 Female, age 42, unknown 62.4
1827 Male, age 72, unknown 57.3
2828 Female, age 72, unknown 57.3
2666 Male, age 74, left hemisphere 54.7
1833 Male, age 53, unknown 54.5
1830 Male, age 51, unknown 52.7
2219 Male, age 76, both hemispheres 40.6
2019 Male, age 18, unknown 38.4
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 59.9
2047 Male, age 72, unknown 71.3
2298 Female, age 72, unknown 63.9
2750 Male, age 76, both hemispheres 58.3
1828 Male, age 53, unknown 56.2
2016 Female, age 72, unknown 49.6
Inferior colliculus
nTPM: 51.3
2097 Female, age 72, unknown 53.9
1848 Female, age 42, unknown 52.6
1890 Male, age 53, unknown 49.3
2849 Male, age 72, unknown 49.3
Median raphe nucleus
nTPM: 77.9
2220 Male, age 76, midline 77.9
Periaquaductal grey, anterior
nTPM: 60.4
1947 Male, age 18, unknown 70.2
1795 Male, age 51, unknown 55.8
2502 Female, age 75, unknown 55.2
Periaquaductal grey, dorsal
nTPM: 54.0
2850 Male, age 76, both hemispheres 68.7
1840 Male, age 53, unknown 58.1
1831 Male, age 72, unknown 47.7
2464 Female, age 72, unknown 41.4
Periaquaductal grey, lateral
nTPM: 58.7
2053 Male, age 18, unknown 60.6
2272 Male, age 74, both hemispheres 58.4
2140 Male, age 76, both hemispheres 57.2
Pretectal area
nTPM: 54.5
2825 Male, age 18, unknown 66.7
2224 Female, age 72, unknown 63.0
1817 Female, age 42, unknown 58.4
2007 Male, age 72, unknown 57.3
2273 Male, age 74, both hemispheres 56.9
1816 Male, age 51, unknown 53.0
2667 Female, age 75, unknown 52.1
1944 Female, age 72, unknown 51.0
1815 Male, age 53, unknown 50.9
2316 Male, age 76, right hemisphere 49.1
2407 Male, age 75, both hemispheres 41.6
Red nucleus
nTPM: 51.1
2725 Female, age 75, unknown 58.6
1821 Female, age 72, unknown 57.5
1865 Male, age 51, unknown 53.4
2823 Male, age 76, right hemisphere 53.0
1954 Female, age 42, unknown 52.7
2769 Male, age 72, unknown 51.8
2503 Female, age 72, unknown 51.7
2227 Male, age 72, unknown 49.5
2588 Male, age 74, left hemisphere 48.0
1904 Male, age 53, unknown 47.1
2785 Male, age 18, unknown 44.9
2584 Male, age 75, left hemisphere 44.7
Substantia nigra
nTPM: 61.2
1916 Female, age 42, unknown 75.5
2409 Female, age 72, unknown 69.6
1889 Female, age 72, unknown 66.4
1941 Male, age 53, unknown 66.1
1851 Male, age 51, unknown 64.3
2699 Male, age 18, unknown 61.9
2665 Male, age 74, both hemispheres 61.3
2241 Male, age 72, unknown 51.8
2590 Female, age 75, unknown 48.9
2583 Male, age 75, right hemisphere 46.2
Superior colliculus
nTPM: 50.6
2668 Female, age 75, unknown 61.1
2587 Male, age 74, left hemisphere 56.1
1895 Male, age 76, right hemisphere 52.2
1796 Male, age 53, unknown 51.8
1839 Male, age 51, unknown 50.0
2261 Male, age 18, unknown 49.8
2087 Female, age 72, unknown 48.8
1913 Female, age 42, unknown 48.5
1995 Male, age 72, unknown 48.1
2664 Male, age 75, both hemispheres 39.3
Ventral tegmental area
nTPM: 58.5
1915 Female, age 42, unknown 63.8
2410 Female, age 72, unknown 63.4
2218 Male, age 76, both hemispheres 61.0
1942 Male, age 51, unknown 56.0
2021 Male, age 53, unknown 56.0
2223 Female, age 72, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.7
Samples: 139

Max nTPM: 166.7
Min nTPM: 39.1
Std nTPM: 21.8
Median nTPM: 79.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 166.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 152.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 143.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 134.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 134.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 130.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 125.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 124.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 123.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 120.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.0
FF:10158-103A5 76 years, female 107.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 118.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.9
Samples: 4

Max nTPM: 161.9
Min nTPM: 62.8
Sample A Female 161.9
Sample B Female 113.6
Sample C Male 101.1
Sample D Male 62.8
Midbrain
nTPM: 103.2
Samples: 4

Max nTPM: 139.1
Min nTPM: 76.8
Sample A Female 139.1
Sample B Female 106.7
Sample C Male 76.8
Sample D Male 90.1
Periaqueductal gray
nTPM: 95.1
Samples: 3

Max nTPM: 109.7
Min nTPM: 86.8
Sample B Female 86.8
Sample C Male 109.7
Sample D Male 88.7
Superior colliculi
nTPM: 118.2
Samples: 4

Max nTPM: 159.7
Min nTPM: 79.0
Sample A Female 159.7
Sample B Female 147.0
Sample C Male 79.0
Sample D Male 87.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 29.0
Sample A Male 38.7
Sample B Male 32.4
Sample C Female 29.0
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71654121 Antisense, RP_050927_03_D04, Mouse strain C57BL/6J (56 days, male) 1.5

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