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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:312.8 nTPM
HPA Brain:97.2 nTPM
GTEx:312.8 nTPM
FANTOM5:340.3 Scaled Tags Per Million
Mouse:774.4 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.2
Sample id Sample description nTPM
Amygdala
nTPM: 97.2
2814 Male, age 76, right hemisphere 132.0
2695 Female, age 67, right hemisphere 109.9
2514 Male, age 75, right hemisphere 89.9
1987 Female, age 91, left hemisphere 78.4
2517 Female, age 94, left hemisphere 75.9
Basal amygdala
nTPM: 76.3
2609 Male, age 75, right hemisphere 89.3
1955 Male, age 76, both hemispheres 81.1
2243 Female, age 91, right hemisphere 78.1
2827 Female, age 67, right hemisphere 73.3
2110 Male, age 80, left hemisphere 71.8
2685 Female, age 94, left hemisphere 64.4
Central amygdala
nTPM: 87.5
1905 Male, age 76, both hemispheres 117.0
2826 Female, age 94, left hemisphere 108.0
2515 Male, age 75, right hemisphere 81.6
2701 Female, age 91, right hemisphere 67.2
2239 Male, age 80, left hemisphere 63.5
Corticomedial amygdala
nTPM: 73.5
2428 Male, age 75, right hemisphere 83.2
2429 Female, age 94, left hemisphere 78.3
2240 Male, age 76, both hemispheres 77.2
2829 Male, age 80, left hemisphere 74.9
2242 Female, age 91, right hemisphere 71.7
2535 Female, age 67, right hemisphere 55.9
Lateral amygdala
nTPM: 75.7
1883 Male, age 76, both hemispheres 115.5
2516 Male, age 75, right hemisphere 91.8
2534 Female, age 94, left hemisphere 86.3
2830 Female, age 67, right hemisphere 68.6
2256 Male, age 80, left hemisphere 47.1
2255 Female, age 91, right hemisphere 45.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 312.8
Samples: 152

Max nTPM: 1463.0
Min nTPM: 128.9
Std nTPM: 145.9
Median nTPM: 284.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1463.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 780.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 746.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 736.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 659.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 613.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 613.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 516.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 515.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 497.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 481.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 480.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 467.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 465.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 458.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 452.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 441.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 434.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 433.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 429.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 427.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 423.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 415.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 405.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 400.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 389.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 380.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 367.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 360.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 360.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 357.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 346.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 345.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 340.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 338.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 337.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 336.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 334.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 334.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 333.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 332.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 331.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 330.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 328.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 327.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 327.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 325.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 318.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 317.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 317.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 317.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 316.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 314.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 311.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 310.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 307.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 307.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 305.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 305.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 303.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 303.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 301.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 300.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 298.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 296.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 296.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 296.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 292.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 292.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 290.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 290.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 287.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 285.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 284.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 284.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 284.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 280.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 279.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 277.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 277.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 276.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 275.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 271.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 268.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 267.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 267.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 266.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 263.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 263.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 263.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 261.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 260.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 254.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 253.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 252.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 252.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 252.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 251.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 250.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 250.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 248.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 246.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 245.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 244.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 244.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 241.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 240.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 239.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 238.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 232.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 232.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 232.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 229.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 227.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 226.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 226.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 223.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 222.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 220.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 219.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 216.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 216.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 216.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 213.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 213.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 209.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 208.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 207.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 207.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 205.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 201.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 200.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 200.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 198.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 198.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 193.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 193.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 192.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 188.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 188.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 182.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 176.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 174.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 173.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 163.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 128.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

340.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 340.3
FF:10151-102I7 76 years, female 340.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

774.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 774.4
Samples: 4

Max nTPM: 847.9
Min nTPM: 704.5
Sample A Male 704.5
Sample B Male 777.8
Sample C Female 847.9
Sample D Female 767.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
77340502 Antisense, RP_070116_02_D11, Mouse strain C57BL/6J (56 days, male) 2.3
71763912 Antisense, RP_050921_02_H02, Mouse strain C57BL/6J (56 days, male) 1.5

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