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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:422.6 nTPM
GTEx:422.6 nTPM
FANTOM5:131.2 Scaled Tags Per Million
Mouse:1170.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

422.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 422.6
Samples: 105

Max nTPM: 683.3
Min nTPM: 263.8
Std nTPM: 75.1
Median nTPM:
35_1 74 years, female 683.3
6_1 73 years, female 581.2
162_1 79 years, female 576.2
386_1 76 years, male 571.0
237_1 82 years, male 563.6
142_1 61 years, female 540.7
379_1 60 years, male 539.8
265_1 87 years, male 521.5
396_1 62 years, male 518.3
490_1 67 years, female 514.5
126_1 63 years, male 513.0
229_1 69 years, female 512.8
375_1 74 years, female 512.7
81_1 67 years, male 511.0
99_1 64 years, male 506.8
117_1 61 years, male 505.1
153_1 70 years, female 494.5
315_1 62 years, female 491.1
17_1 71 years, male 491.0
316_1 62 years, male 488.2
447_1 81 years, male 484.2
243_1 75 years, male 481.7
466_1 57 years, female 481.5
355_1 70 years, female 481.3
9_1 66 years, female 480.4
217_1 76 years, male 480.1
246_1 77 years, male 479.9
347_1 72 years, male 475.5
266_1 85 years, male 474.0
115_1 83 years, male 471.6
119_1 70 years, female 470.2
499_1 55 years, female 468.3
324_1 76 years, male 465.1
415_1 77 years, female 463.7
218_1 71 years, female 454.4
377_1 82 years, female 452.1
352_1 62 years, male 451.7
414_1 84 years, female 445.6
405_1 91 years, male 445.2
32_1 67 years, male 444.7
480_1 63 years, male 444.7
42_1 85 years, male 443.4
145_1 84 years, male 438.5
307_1 66 years, female 436.8
468_1 89 years, male 436.5
18_1 88 years, male 434.1
321_1 62 years, female 433.2
43_1 64 years, female 428.0
172_1 72 years, female 424.6
354_1 81 years, female 424.5
404_1 82 years, female 423.7
495_1 57 years, female 420.0
526_1 61 years, male 419.2
491_1 89 years, female 418.2
322_1 76 years, male 413.4
350_1 84 years, female 412.7
2_1 77 years, female 409.3
313_1 79 years, female 408.4
189_1 76 years, male 407.4
394_1 75 years, female 405.3
4_1 88 years, female 401.8
335_1 73 years, female 400.2
120_1 70 years, female 399.0
501_1 88 years, male 398.6
254_1 77 years, female 396.4
384_1 83 years, male 396.4
320_1 89 years, female 395.8
177_1 74 years, male 393.0
349_1 83 years, male 390.0
319_1 81 years, male 387.9
353_1 82 years, female 380.0
89_1 63 years, male 377.7
311_1 78 years, male 376.3
139_1 64 years, female 372.0
317_1 60 years, male 371.8
173_1 67 years, male 370.8
406_1 79 years, male 368.5
376_1 75 years, female 366.7
517_1 88 years, male 363.0
318_1 68 years, male 362.3
503_1 68 years, male 361.4
163_1 78 years, male 361.2
286_1 68 years, female 354.6
518_1 75 years, female 354.0
149_1 88 years, male 350.6
109_1 81 years, female 350.5
389_1 86 years, female 350.3
137_1 83 years, male 349.3
251_1 78 years, male 348.1
356_1 87 years, female 347.6
264_1 73 years, female 343.4
506_1 65 years, male 338.4
288_1 66 years, female 330.8
314_1 67 years, male 328.4
295_1 61 years, female 325.9
41_1 94 years, female 324.9
292_1 71 years, male 323.1
425_1 59 years, female 322.4
291_1 76 years, male 318.0
348_1 84 years, male 314.9
413_1 59 years, female 308.4
308_1 70 years, female 296.2
351_1 91 years, male 285.7
293_1 68 years, female 284.6
452_1 88 years, female 263.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 131.2
FF:10030-101E3 24-65 years, mixed 131.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1170.3
Mouse sample Sample description nTPM
Retina
nTPM: 1170.3
Samples: 4

Max nTPM: 1309.7
Min nTPM: 1025.9
Sample A Male 1299.5
Sample B Male 1025.9
Sample C Female 1309.7
Sample D Female 1046.2

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