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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:549.8 nTPM
HPA Brain:304.4 nTPM
GTEx:549.8 nTPM
FANTOM5:264.7 Scaled Tags Per Million
Pig:452.2 nTPM
Mouse:1366.6 nTPM
Allen mouse:6.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.4
Sample id Sample description nTPM
Amygdala
nTPM: 304.4
2814 Male, age 76, right hemisphere 382.9
2695 Female, age 67, right hemisphere 312.0
2514 Male, age 75, right hemisphere 310.9
1987 Female, age 91, left hemisphere 265.3
2517 Female, age 94, left hemisphere 250.7
Basal amygdala
nTPM: 236.5
2609 Male, age 75, right hemisphere 337.9
1955 Male, age 76, both hemispheres 245.8
2110 Male, age 80, left hemisphere 216.3
2685 Female, age 94, left hemisphere 215.3
2243 Female, age 91, right hemisphere 209.7
2827 Female, age 67, right hemisphere 194.1
Central amygdala
nTPM: 283.3
1905 Male, age 76, both hemispheres 367.8
2826 Female, age 94, left hemisphere 336.1
2515 Male, age 75, right hemisphere 305.4
2239 Male, age 80, left hemisphere 205.6
2701 Female, age 91, right hemisphere 201.7
Corticomedial amygdala
nTPM: 221.8
2428 Male, age 75, right hemisphere 291.4
2829 Male, age 80, left hemisphere 262.4
2429 Female, age 94, left hemisphere 231.1
2240 Male, age 76, both hemispheres 207.2
2242 Female, age 91, right hemisphere 188.8
2535 Female, age 67, right hemisphere 149.6
Lateral amygdala
nTPM: 257.8
2516 Male, age 75, right hemisphere 364.1
1883 Male, age 76, both hemispheres 292.1
2534 Female, age 94, left hemisphere 265.0
2830 Female, age 67, right hemisphere 236.7
2255 Female, age 91, right hemisphere 197.6
2256 Male, age 80, left hemisphere 191.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 549.8
Samples: 152

Max nTPM: 1933.6
Min nTPM: 243.3
Std nTPM: 216.6
Median nTPM: 506.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1933.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1400.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1252.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1238.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1217.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 961.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 933.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 862.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 840.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 834.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 828.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 818.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 802.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 766.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 730.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 725.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 715.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 708.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 700.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 690.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 686.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 678.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 674.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 671.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 670.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 669.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 668.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 667.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 667.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 663.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 661.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 659.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 650.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 646.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 644.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 640.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 640.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 638.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 636.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 634.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 629.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 626.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 620.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 616.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 613.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 607.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 595.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 591.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 587.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 582.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 578.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 577.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 570.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 569.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 564.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 563.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 562.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 557.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 556.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 555.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 552.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 550.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 545.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 542.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 539.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 535.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 534.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 533.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 530.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 524.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 523.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 516.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 515.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 515.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 513.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 507.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 506.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 504.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 503.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 498.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 491.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 490.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 489.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 489.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 489.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 488.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 488.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 486.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 485.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 476.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 474.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 473.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 469.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 468.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 466.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 465.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 464.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 459.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 455.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 454.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 454.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 451.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 447.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 443.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 443.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 436.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 435.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 433.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 432.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 427.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 424.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 421.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 419.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 418.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 418.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 417.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 416.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 414.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 414.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 413.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 410.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 406.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 403.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 402.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 397.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 397.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 397.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 386.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 382.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 381.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 378.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 373.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 364.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 362.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 362.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 353.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 352.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 345.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 342.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 336.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 333.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 328.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 325.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 323.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 321.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 319.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 316.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 292.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 287.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 245.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 244.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 243.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 264.7
FF:10151-102I7 76 years, female 264.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

452.2
Pig sample Sample description nTPM
Amygdala
nTPM: 452.2
Samples: 4

Max nTPM: 671.1
Min nTPM: 347.1
Sample A Female 671.1
Sample B Female 416.5
Sample C Male 374.2
Sample D Male 347.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1366.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1366.6
Samples: 4

Max nTPM: 2038.8
Min nTPM: 1052.0
Sample A Male 1052.0
Sample B Male 1205.2
Sample C Female 2038.8
Sample D Female 1170.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.3
69568986 Antisense, RP_050426_03_C02, Mouse strain C57BL/6J (56 days, male) 6.3

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