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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:144.9 nTPM
GTEx:144.9 nTPM
FANTOM5:281.2 Scaled Tags Per Million
Pig:271.3 nTPM
Mouse:622.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 144.9
Samples: 105

Max nTPM: 261.7
Min nTPM: 18.9
Std nTPM: 56.8
Median nTPM:
377_1 82 years, female 261.7
319_1 81 years, male 246.0
352_1 62 years, male 245.3
356_1 87 years, female 244.0
163_1 78 years, male 240.6
243_1 75 years, male 234.5
321_1 62 years, female 227.6
354_1 81 years, female 221.2
320_1 89 years, female 219.6
351_1 91 years, male 217.6
376_1 75 years, female 213.9
350_1 84 years, female 213.4
386_1 76 years, male 212.2
172_1 72 years, female 211.7
506_1 65 years, male 211.7
177_1 74 years, male 208.3
394_1 75 years, female 204.0
353_1 82 years, female 203.4
218_1 71 years, female 200.9
322_1 76 years, male 200.9
349_1 83 years, male 199.8
425_1 59 years, female 197.0
452_1 88 years, female 192.1
335_1 73 years, female 188.3
406_1 79 years, male 187.9
293_1 68 years, female 185.7
355_1 70 years, female 185.1
404_1 82 years, female 182.7
286_1 68 years, female 179.3
379_1 60 years, male 178.9
4_1 88 years, female 178.7
375_1 74 years, female 175.1
115_1 83 years, male 175.0
318_1 68 years, male 174.4
264_1 73 years, female 173.7
189_1 76 years, male 171.9
480_1 63 years, male 171.6
251_1 78 years, male 171.2
6_1 73 years, female 170.2
99_1 64 years, male 169.7
405_1 91 years, male 163.6
503_1 68 years, male 163.2
246_1 77 years, male 162.5
316_1 62 years, male 161.4
384_1 83 years, male 160.6
237_1 82 years, male 160.2
292_1 71 years, male 158.9
517_1 88 years, male 158.2
526_1 61 years, male 156.1
295_1 61 years, female 154.8
389_1 86 years, female 153.8
447_1 81 years, male 153.5
18_1 88 years, male 150.9
266_1 85 years, male 150.8
9_1 66 years, female 145.2
153_1 70 years, female 145.1
254_1 77 years, female 144.1
17_1 71 years, male 143.6
265_1 87 years, male 143.5
468_1 89 years, male 143.5
317_1 60 years, male 142.1
173_1 67 years, male 140.7
229_1 69 years, female 137.4
2_1 77 years, female 135.5
396_1 62 years, male 134.5
145_1 84 years, male 131.9
120_1 70 years, female 131.1
35_1 74 years, female 127.3
291_1 76 years, male 126.8
347_1 72 years, male 126.0
137_1 83 years, male 125.8
348_1 84 years, male 125.0
126_1 63 years, male 122.8
518_1 75 years, female 122.4
109_1 81 years, female 118.8
288_1 66 years, female 110.4
499_1 55 years, female 109.0
42_1 85 years, male 106.0
311_1 78 years, male 105.4
117_1 61 years, male 102.9
217_1 76 years, male 97.8
324_1 76 years, male 97.5
313_1 79 years, female 92.5
142_1 61 years, female 91.7
81_1 67 years, male 89.7
307_1 66 years, female 80.6
162_1 79 years, female 79.3
314_1 67 years, male 78.2
315_1 62 years, female 77.9
139_1 64 years, female 75.9
119_1 70 years, female 67.8
32_1 67 years, male 67.2
495_1 57 years, female 60.6
41_1 94 years, female 60.4
43_1 64 years, female 59.8
415_1 77 years, female 58.9
466_1 57 years, female 56.8
308_1 70 years, female 56.2
501_1 88 years, male 55.9
414_1 84 years, female 47.1
89_1 63 years, male 44.5
149_1 88 years, male 43.0
413_1 59 years, female 28.0
490_1 67 years, female 22.7
491_1 89 years, female 18.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 281.2
FF:10030-101E3 24-65 years, mixed 281.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.3
Pig sample Sample description nTPM
Retina
nTPM: 271.3
Samples: 4

Max nTPM: 293.2
Min nTPM: 243.4
Sample A Female 265.7
Sample B Female 283.0
Sample C Male 293.2
Sample D Male 243.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

622.7
Mouse sample Sample description nTPM
Retina
nTPM: 622.7
Samples: 4

Max nTPM: 989.8
Min nTPM: 456.1
Sample A Male 579.9
Sample B Male 465.1
Sample C Female 989.8
Sample D Female 456.1

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