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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:475.1 nTPM
FANTOM5:238.5 Scaled Tags Per Million
Pig:679.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055942
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

475.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 475.1
Samples: 246

Max nTPM: 1180.5
Min nTPM: 236.1
Std nTPM: 126.2
Median nTPM: 461.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1180.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1118.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 927.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 882.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 871.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 857.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 771.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 731.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 719.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 702.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 694.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 681.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 677.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 675.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 665.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 663.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 659.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 653.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 641.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 635.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 635.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 617.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 605.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 599.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 597.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 596.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 593.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 590.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 589.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 587.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 586.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 586.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 586.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 585.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 583.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 583.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 582.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 581.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 581.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 572.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 572.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 571.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 568.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 568.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 568.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 566.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 560.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 557.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 555.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 555.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 552.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 551.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 542.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 542.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 539.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 539.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 538.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 536.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 535.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 533.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 531.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 531.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 526.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 525.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 520.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 517.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 515.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 514.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 513.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 512.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 511.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 506.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 506.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 505.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 504.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 503.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 501.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 500.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 499.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 499.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 497.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 495.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 491.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 491.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 491.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 490.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 489.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 489.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 489.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 488.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 488.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 488.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 487.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 486.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 485.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 485.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 483.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 482.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 481.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 480.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 480.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 480.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 477.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 476.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 475.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 474.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 473.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 473.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 473.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 471.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 471.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 471.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 470.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 470.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 470.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 469.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 468.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 468.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 467.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 467.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 465.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 464.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 462.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 461.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 460.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 460.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 459.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 458.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 457.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 456.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 456.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 454.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 453.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 452.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 452.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 450.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 448.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 447.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 446.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 446.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 446.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 446.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 445.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 444.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 444.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 443.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 441.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 438.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 437.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 435.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 434.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 434.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 433.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 433.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 429.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 429.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 428.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 427.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 425.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 424.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 423.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 420.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 419.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 416.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 413.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 412.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 412.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 412.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 411.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 411.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 411.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 410.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 409.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 409.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 405.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 404.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 403.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 402.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 400.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 399.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 399.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 399.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 397.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 396.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 396.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 395.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 395.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 394.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 392.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 391.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 387.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 387.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 386.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 386.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 382.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 380.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 379.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 378.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 377.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 374.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 373.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 372.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 372.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 370.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 370.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 369.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 368.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 367.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 367.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 363.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 363.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 362.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 361.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 360.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 360.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 358.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 356.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 355.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 351.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 347.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 347.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 346.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 341.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 341.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 340.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 337.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 332.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 324.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 321.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 318.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 317.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 316.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 311.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 309.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 305.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 305.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 300.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 299.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 298.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 295.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 283.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 282.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 279.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 278.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 237.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 236.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 238.5
FF:10164-103B2 76 years, female 238.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.2
Pig sample Sample description nTPM
Caudate
nTPM: 679.3
Samples: 4

Max nTPM: 799.4
Min nTPM: 587.4
Sample A Female 591.5
Sample B Female 738.7
Sample C Male 799.4
Sample D Male 587.4

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