We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COX8A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COX8A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:370.9 nTPM
HPA:278.9 nTPM
GTEx:370.9 nTPM
FANTOM5:582.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055942
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.9
overview
Male, age 65
Small intestine sample 232
nTPM: 275.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 323.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 258.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 258.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

370.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 370.9
Samples: 187

Max nTPM: 840.6
Min nTPM: 135.9
Std nTPM: 154.2
Median nTPM: 346.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 840.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 783.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 770.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 768.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 766.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 745.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 734.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 677.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 672.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 668.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 644.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 637.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 630.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 630.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 624.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 617.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 603.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 600.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 596.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 593.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 589.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 584.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 578.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 574.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 573.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 568.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 554.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 541.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 532.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 531.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 527.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 526.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 522.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 521.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 513.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 501.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 501.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 498.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 497.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 492.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 488.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 484.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 484.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 475.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 473.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 464.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 464.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 459.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 458.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 450.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 445.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 439.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 437.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 436.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 430.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 427.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 424.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 423.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 421.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 421.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 415.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 413.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 401.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 400.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 399.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 397.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 397.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 395.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 394.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 391.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 390.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 390.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 386.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 384.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 384.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 381.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 381.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 379.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 377.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 375.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 374.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 371.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 368.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 368.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 367.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 366.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 360.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 359.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 359.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 359.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 358.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 352.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 350.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 346.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 345.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 345.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 339.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 339.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 338.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 338.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 335.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 335.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 333.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 330.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 326.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 321.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 318.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 318.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 317.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 313.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 312.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 310.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 303.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 300.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 299.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 298.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 296.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 293.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 292.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 288.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 285.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 284.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 284.7
GTEX-1192X-2526-SM-59868 50-59 years, male 282.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 282.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 280.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 276.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 274.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 274.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 273.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 272.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 271.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 263.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 262.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 259.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 259.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 251.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 250.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 249.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 248.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 248.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 246.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 245.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 243.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 242.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 242.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 241.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 239.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 239.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 239.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 237.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 236.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 233.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 232.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 228.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 223.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 219.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 219.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 215.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 214.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 211.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 210.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 209.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 204.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 202.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 201.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 200.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 191.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 189.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 185.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 183.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 176.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 175.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 173.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 170.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 166.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 163.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 159.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 159.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 158.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 155.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 155.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 154.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 149.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 147.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 137.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 135.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

582.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 582.9
FF:10024-101D6 15,40,85 years, mixed 582.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org