MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA Brain:139.6 nTPM
GTEx:38.6 nTPM
FANTOM5:87.3 Scaled Tags Per Million
Mouse:62.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 139.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.5
1830 Male, age 51, unknown 130.4
2586 Male, age 75, left hemisphere 130.2
1833 Male, age 53, unknown 124.2
2411 Female, age 72, unknown 118.3
1870 Female, age 42, unknown 113.1
2019 Male, age 18, unknown 104.6
2828 Female, age 72, unknown 102.6
1827 Male, age 72, unknown 77.0
2666 Male, age 74, left hemisphere 76.5
2219 Male, age 76, both hemispheres 67.6
Dorsal raphe nucleus
nTPM: 76.5
2750 Male, age 76, both hemispheres 129.7
2016 Female, age 72, unknown 92.2
1828 Male, age 53, unknown 71.2
2047 Male, age 72, unknown 45.9
2298 Female, age 72, unknown 43.6
Inferior colliculus
nTPM: 64.8
2849 Male, age 72, unknown 79.4
1848 Female, age 42, unknown 67.4
1890 Male, age 53, unknown 65.9
2097 Female, age 72, unknown 46.6
Median raphe nucleus
nTPM: 41.5
2220 Male, age 76, midline 41.5
Periaquaductal grey, anterior
nTPM: 67.8
1947 Male, age 18, unknown 73.8
2502 Female, age 75, unknown 73.7
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 49.6
2464 Female, age 72, unknown 76.8
1831 Male, age 72, unknown 49.1
1840 Male, age 53, unknown 38.4
2850 Male, age 76, both hemispheres 34.0
Periaquaductal grey, lateral
nTPM: 58.7
2272 Male, age 74, both hemispheres 80.1
2053 Male, age 18, unknown 58.6
2140 Male, age 76, both hemispheres 37.4
Pretectal area
nTPM: 68.0
2316 Male, age 76, right hemisphere 107.4
2407 Male, age 75, both hemispheres 97.3
1815 Male, age 53, unknown 90.8
2825 Male, age 18, unknown 76.4
2007 Male, age 72, unknown 69.1
1817 Female, age 42, unknown 67.9
2224 Female, age 72, unknown 58.0
2273 Male, age 74, both hemispheres 58.0
2667 Female, age 75, unknown 50.0
1816 Male, age 51, unknown 37.2
1944 Female, age 72, unknown 35.7
Red nucleus
nTPM: 139.6
1904 Male, age 53, unknown 157.2
2769 Male, age 72, unknown 156.8
2785 Male, age 18, unknown 156.5
2823 Male, age 76, right hemisphere 151.4
1865 Male, age 51, unknown 149.9
2227 Male, age 72, unknown 147.0
2503 Female, age 72, unknown 143.8
2588 Male, age 74, left hemisphere 132.6
1954 Female, age 42, unknown 125.1
1821 Female, age 72, unknown 123.5
2584 Male, age 75, left hemisphere 116.9
2725 Female, age 75, unknown 114.5
Substantia nigra
nTPM: 76.0
2583 Male, age 75, right hemisphere 137.8
2590 Female, age 75, unknown 105.4
1851 Male, age 51, unknown 86.9
2699 Male, age 18, unknown 79.7
2409 Female, age 72, unknown 78.1
1889 Female, age 72, unknown 69.9
1916 Female, age 42, unknown 55.0
1941 Male, age 53, unknown 49.8
2241 Male, age 72, unknown 48.8
2665 Male, age 74, both hemispheres 48.6
Superior colliculus
nTPM: 90.9
1995 Male, age 72, unknown 149.9
1913 Female, age 42, unknown 128.0
1895 Male, age 76, right hemisphere 117.0
1839 Male, age 51, unknown 101.8
2587 Male, age 74, left hemisphere 87.1
2668 Female, age 75, unknown 81.9
2664 Male, age 75, both hemispheres 79.7
1796 Male, age 53, unknown 75.7
2261 Male, age 18, unknown 48.1
2087 Female, age 72, unknown 39.8
Ventral tegmental area
nTPM: 78.5
2410 Female, age 72, unknown 97.3
2223 Female, age 72, unknown 88.1
1942 Male, age 51, unknown 79.5
2021 Male, age 53, unknown 74.6
1915 Female, age 42, unknown 70.2
2218 Male, age 76, both hemispheres 61.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.6
Samples: 139

Max nTPM: 150.6
Min nTPM: 8.8
Std nTPM: 25.6
Median nTPM: 30.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 150.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 146.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 119.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 104.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 102.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 95.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 91.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 87.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.3
FF:10158-103A5 76 years, female 87.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.9
Samples: 4

Max nTPM: 69.8
Min nTPM: 58.8
Sample A Male 69.8
Sample B Male 58.8
Sample C Female 60.0
Sample D Female 63.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69447782 Antisense, RP_050419_02_A12, Mouse strain C57BL/6J (56 days, male) 2.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org