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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.3 nTPM
HPA Brain:81.7 nTPM
GTEx:51.3 nTPM
FANTOM5:25.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 67.8
2194 Female, age 79, both hemispheres 86.3
2816 Male, age 47, midline 70.0
2565 Male, age 75, midline 68.0
1981 Female, age 72, midline 67.4
2048 Male, age 55, midline 47.6
Cervical spinal cord, dorsal horn
nTPM: 72.8
2173 Female, age 72, unknown 112.9
2296 Male, age 66, both hemispheres 94.9
2069 Male, age 47, both hemispheres 67.2
1877 Male, age 55, unknown 59.9
2297 Male, age 75, both hemispheres 57.1
2721 Male, age 90, both hemispheres 44.8
Cervical spinal cord, ventral horn
nTPM: 81.7
2820 Female, age 79, both hemispheres 106.1
2068 Male, age 55, unknown 105.1
2809 Male, age 90, both hemispheres 81.9
2295 Male, age 66, both hemispheres 81.2
2480 Male, age 75, both hemispheres 80.9
2098 Female, age 72, unknown 34.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 51.3
Samples: 159

Max nTPM: 205.5
Min nTPM: 8.0
Std nTPM: 30.0
Median nTPM: 44.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 205.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 176.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 129.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 128.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 125.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 125.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 118.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 116.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 116.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 109.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 102.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 102.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 96.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 91.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 88.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 87.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 86.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 85.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 84.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 76.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 73.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 69.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 69.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 68.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 66.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 65.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 64.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 63.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 63.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 63.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 61.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 61.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 60.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 58.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 58.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 58.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 57.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 57.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 57.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 57.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 56.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 55.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 52.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 51.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 51.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 51.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 50.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 50.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 50.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 50.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 49.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 49.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 49.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 48.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 48.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 48.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 47.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 46.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 46.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 46.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 45.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 45.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 45.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 44.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 44.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 44.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 44.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 43.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 43.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 43.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 43.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 43.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 42.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 42.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 42.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 42.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 41.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 41.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 41.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 41.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 40.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 40.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 40.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 40.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 39.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 39.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 38.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 38.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 38.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 37.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 36.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 36.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 35.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 35.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 35.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 35.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 34.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 34.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 34.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 34.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 34.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 33.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 33.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 33.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 33.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 32.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 32.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 32.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 32.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 32.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 32.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 31.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 31.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 30.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 30.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 29.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 29.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 28.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 28.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 28.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 27.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 27.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 27.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 27.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 24.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 24.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 22.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 22.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 22.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 21.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 21.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 20.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 20.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 18.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 16.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 16.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 14.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 12.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 12.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 12.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 11.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 9.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 8.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.2
FF:10181-103D1 60 years, female 29.5
FF:10159-103A6 76 years, female 21.0

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