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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3407.9 nTPM
HPA Brain:361.8 nTPM
GTEx:3407.9 nTPM
FANTOM5:282.3 Scaled Tags Per Million
Pig:24.1 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.8
Sample id Sample description nTPM
Amygdala
nTPM: 361.8
2695 Female, age 67, right hemisphere 546.4
2514 Male, age 75, right hemisphere 384.4
2517 Female, age 94, left hemisphere 338.2
2814 Male, age 76, right hemisphere 284.1
1987 Female, age 91, left hemisphere 256.2
Basal amygdala
nTPM: 335.5
2827 Female, age 67, right hemisphere 484.5
2609 Male, age 75, right hemisphere 389.4
2243 Female, age 91, right hemisphere 315.6
2685 Female, age 94, left hemisphere 283.6
1955 Male, age 76, both hemispheres 270.9
2110 Male, age 80, left hemisphere 269.2
Central amygdala
nTPM: 338.3
2826 Female, age 94, left hemisphere 522.9
2515 Male, age 75, right hemisphere 318.6
2239 Male, age 80, left hemisphere 304.0
2701 Female, age 91, right hemisphere 296.5
1905 Male, age 76, both hemispheres 249.4
Corticomedial amygdala
nTPM: 332.3
2535 Female, age 67, right hemisphere 410.3
2240 Male, age 76, both hemispheres 402.4
2429 Female, age 94, left hemisphere 323.6
2242 Female, age 91, right hemisphere 313.0
2428 Male, age 75, right hemisphere 298.9
2829 Male, age 80, left hemisphere 245.6
Lateral amygdala
nTPM: 349.0
2830 Female, age 67, right hemisphere 474.1
2534 Female, age 94, left hemisphere 472.4
2516 Male, age 75, right hemisphere 410.3
2256 Male, age 80, left hemisphere 290.9
2255 Female, age 91, right hemisphere 235.3
1883 Male, age 76, both hemispheres 211.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3407.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3407.9
Samples: 152

Max nTPM: 11188.4
Min nTPM: 1319.9
Std nTPM: 1676.3
Median nTPM: 2960.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 11188.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9410.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 8995.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 8505.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 7867.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 7533.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 6748.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6547.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 6532.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6472.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6287.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6188.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5990.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5893.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5742.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 5622.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5445.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5392.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 5206.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 5155.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 5148.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 4990.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4808.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 4722.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4706.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4657.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 4650.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 4541.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4468.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4450.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4428.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4364.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 4238.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 4165.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4065.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4064.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 4040.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 4029.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3981.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3886.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 3842.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3831.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3797.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 3786.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 3784.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3657.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3639.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3607.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3544.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3543.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3538.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3484.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3470.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3461.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3452.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3450.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3421.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3411.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 3385.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3374.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 3359.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3346.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3326.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3323.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3317.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3316.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 3247.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3232.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3195.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3194.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3170.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3125.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3097.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 3048.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3041.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2962.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2957.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2953.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2910.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2880.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2851.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2759.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2750.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2746.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2714.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2713.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2683.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2682.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2670.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2611.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2609.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2591.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2566.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2561.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2561.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2549.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2540.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2537.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2518.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2496.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2494.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2490.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2484.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2476.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2440.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2439.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2428.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2411.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2408.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2408.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2389.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2384.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2370.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2357.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2338.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2321.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2304.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2251.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2251.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2240.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2221.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2212.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2179.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2155.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2108.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2082.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2075.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2067.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2059.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1999.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1969.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1884.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1861.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1831.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1820.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1809.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1778.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1758.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1755.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1747.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1746.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1744.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1701.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1681.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1666.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1570.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1564.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1472.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1446.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1344.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1323.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1319.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

282.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 282.3
FF:10151-102I7 76 years, female 282.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Pig sample Sample description nTPM
Amygdala
nTPM: 24.1
Samples: 4

Max nTPM: 34.4
Min nTPM: 14.5
Sample A Female 18.5
Sample B Female 14.5
Sample C Male 28.9
Sample D Male 34.4

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