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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3054.9 nTPM
HPA Brain:387.6 nTPM
GTEx:3054.9 nTPM
FANTOM5:273.4 Scaled Tags Per Million
Pig:0.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 339.1
2565 Male, age 75, midline 505.5
1981 Female, age 72, midline 374.3
2048 Male, age 55, midline 355.9
2816 Male, age 47, midline 278.7
2194 Female, age 79, both hemispheres 181.3
Cervical spinal cord, dorsal horn
nTPM: 345.4
2069 Male, age 47, both hemispheres 430.9
2173 Female, age 72, unknown 421.1
1877 Male, age 55, unknown 365.6
2296 Male, age 66, both hemispheres 301.0
2721 Male, age 90, both hemispheres 297.7
2297 Male, age 75, both hemispheres 256.2
Cervical spinal cord, ventral horn
nTPM: 387.6
2098 Female, age 72, unknown 526.7
2480 Male, age 75, both hemispheres 453.4
2809 Male, age 90, both hemispheres 447.2
2068 Male, age 55, unknown 405.2
2295 Male, age 66, both hemispheres 303.8
2820 Female, age 79, both hemispheres 189.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3054.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3054.9
Samples: 159

Max nTPM: 6310.7
Min nTPM: 1204.1
Std nTPM: 1127.3
Median nTPM: 2806.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6310.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5996.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5899.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5822.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5821.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 5814.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 5472.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 5445.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5331.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 5151.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 4924.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4816.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 4694.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4685.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 4661.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4655.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 4655.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 4647.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 4595.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4549.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4547.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 4398.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4282.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 4263.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4257.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4257.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4219.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 4194.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 4143.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 4137.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4119.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4109.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4053.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4028.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3923.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 3799.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3790.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3710.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 3704.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3701.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3689.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3674.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3637.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3636.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3591.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 3562.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3548.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3520.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3488.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 3485.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3482.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3461.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 3457.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 3395.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3390.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3370.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3333.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 3320.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3310.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 3308.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3303.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 3265.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3216.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 3166.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3127.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3066.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3063.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3061.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3057.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3050.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2952.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2936.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2914.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2903.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2880.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2869.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2847.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2843.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2812.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2806.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2797.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2789.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 2779.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2740.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2735.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2707.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2684.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2662.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2632.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2619.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2618.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2562.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2551.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2538.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2514.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2510.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2504.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2499.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2492.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2488.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2483.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2482.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2478.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2465.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2462.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2440.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 2425.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2418.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2400.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2381.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2374.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2364.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2341.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2338.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2327.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2325.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2279.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2257.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2203.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2197.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2177.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2141.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2141.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2135.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2130.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2095.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2088.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2080.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2053.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2036.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2020.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2016.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1985.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1977.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1971.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1968.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1938.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1935.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1883.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1860.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1849.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1804.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1762.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1756.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1715.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1712.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1705.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1650.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1633.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1615.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1586.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1553.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1552.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1454.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1448.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1356.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1236.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1212.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1204.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 273.4
FF:10181-103D1 60 years, female 361.8
FF:10159-103A6 76 years, female 184.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Female 0.7
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.4
Ventral spinal cord
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.0
Sample A Female 0.9
Sample B Female 0.0
Sample C Male 0.9
Sample D Male 0.0

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