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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1367.1 nTPM
GTEx:1367.1 nTPM
FANTOM5:254.6 Scaled Tags Per Million
Pig:12.6 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1367.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1367.1
Samples: 105

Max nTPM: 1979.9
Min nTPM: 932.3
Std nTPM: 219.6
Median nTPM:
153_1 70 years, female 1979.9
246_1 77 years, male 1919.9
495_1 57 years, female 1814.1
17_1 71 years, male 1750.1
189_1 76 years, male 1726.4
384_1 83 years, male 1724.4
322_1 76 years, male 1701.4
321_1 62 years, female 1699.1
389_1 86 years, female 1696.0
139_1 64 years, female 1694.9
377_1 82 years, female 1683.6
120_1 70 years, female 1680.9
379_1 60 years, male 1657.5
308_1 70 years, female 1640.3
452_1 88 years, female 1638.0
307_1 66 years, female 1629.6
126_1 63 years, male 1615.9
414_1 84 years, female 1611.5
35_1 74 years, female 1605.3
404_1 82 years, female 1584.9
41_1 94 years, female 1582.4
265_1 87 years, male 1574.1
394_1 75 years, female 1559.8
4_1 88 years, female 1545.2
376_1 75 years, female 1539.8
311_1 78 years, male 1520.9
526_1 61 years, male 1518.8
2_1 77 years, female 1498.0
145_1 84 years, male 1492.2
320_1 89 years, female 1490.8
177_1 74 years, male 1480.1
396_1 62 years, male 1473.4
229_1 69 years, female 1473.1
254_1 77 years, female 1472.6
237_1 82 years, male 1470.2
405_1 91 years, male 1468.7
315_1 62 years, female 1463.8
137_1 83 years, male 1458.9
386_1 76 years, male 1430.6
18_1 88 years, male 1421.6
316_1 62 years, male 1406.8
501_1 88 years, male 1406.5
518_1 75 years, female 1393.0
217_1 76 years, male 1388.6
89_1 63 years, male 1387.7
447_1 81 years, male 1375.5
466_1 57 years, female 1366.5
266_1 85 years, male 1362.9
413_1 59 years, female 1362.4
6_1 73 years, female 1355.9
251_1 78 years, male 1352.1
319_1 81 years, male 1345.2
142_1 61 years, female 1328.8
415_1 77 years, female 1326.5
499_1 55 years, female 1320.3
162_1 79 years, female 1318.7
491_1 89 years, female 1314.6
163_1 78 years, male 1309.2
355_1 70 years, female 1308.4
406_1 79 years, male 1307.7
173_1 67 years, male 1302.2
347_1 72 years, male 1296.3
119_1 70 years, female 1292.9
324_1 76 years, male 1288.8
81_1 67 years, male 1278.7
264_1 73 years, female 1278.7
288_1 66 years, female 1278.7
348_1 84 years, male 1272.0
468_1 89 years, male 1269.9
375_1 74 years, female 1258.3
109_1 81 years, female 1244.5
117_1 61 years, male 1238.9
314_1 67 years, male 1235.5
243_1 75 years, male 1222.3
172_1 72 years, female 1219.7
295_1 61 years, female 1216.8
42_1 85 years, male 1216.0
115_1 83 years, male 1206.3
313_1 79 years, female 1200.8
218_1 71 years, female 1200.5
317_1 60 years, male 1197.2
503_1 68 years, male 1195.6
351_1 91 years, male 1178.2
318_1 68 years, male 1177.2
291_1 76 years, male 1176.6
425_1 59 years, female 1175.4
149_1 88 years, male 1171.3
335_1 73 years, female 1167.7
517_1 88 years, male 1134.9
32_1 67 years, male 1133.3
480_1 63 years, male 1123.8
353_1 82 years, female 1121.5
349_1 83 years, male 1118.7
292_1 71 years, male 1100.2
352_1 62 years, male 1090.1
99_1 64 years, male 1088.9
354_1 81 years, female 1081.3
286_1 68 years, female 1074.8
293_1 68 years, female 1074.2
490_1 67 years, female 1034.0
350_1 84 years, female 1015.3
506_1 65 years, male 1012.2
9_1 66 years, female 990.3
356_1 87 years, female 940.6
43_1 64 years, female 932.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

254.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 254.6
FF:10030-101E3 24-65 years, mixed 254.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.6
Pig sample Sample description nTPM
Retina
nTPM: 12.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.0
Sample A Female 16.9
Sample B Female 10.9
Sample C Male 10.0
Sample D Male 12.5

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