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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:248.5 nTPM
HPA Brain:183.1 nTPM
GTEx:248.5 nTPM
FANTOM5:164.5 Scaled Tags Per Million
Pig:87.6 nTPM
Mouse:365.0 nTPM
Allen mouse:8.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.1
Sample id Sample description nTPM
Amygdala
nTPM: 183.1
2814 Male, age 76, right hemisphere 244.8
2514 Male, age 75, right hemisphere 172.5
2695 Female, age 67, right hemisphere 171.5
1987 Female, age 91, left hemisphere 163.7
2517 Female, age 94, left hemisphere 162.8
Basal amygdala
nTPM: 156.3
2243 Female, age 91, right hemisphere 178.5
2609 Male, age 75, right hemisphere 177.1
2110 Male, age 80, left hemisphere 165.7
1955 Male, age 76, both hemispheres 160.2
2685 Female, age 94, left hemisphere 152.4
2827 Female, age 67, right hemisphere 104.0
Central amygdala
nTPM: 170.7
1905 Male, age 76, both hemispheres 215.0
2826 Female, age 94, left hemisphere 182.6
2239 Male, age 80, left hemisphere 162.6
2515 Male, age 75, right hemisphere 149.1
2701 Female, age 91, right hemisphere 144.2
Corticomedial amygdala
nTPM: 160.3
2829 Male, age 80, left hemisphere 187.8
2242 Female, age 91, right hemisphere 175.4
2240 Male, age 76, both hemispheres 162.2
2429 Female, age 94, left hemisphere 156.2
2428 Male, age 75, right hemisphere 152.3
2535 Female, age 67, right hemisphere 127.6
Lateral amygdala
nTPM: 151.4
1883 Male, age 76, both hemispheres 232.8
2516 Male, age 75, right hemisphere 172.4
2534 Female, age 94, left hemisphere 168.6
2255 Female, age 91, right hemisphere 123.8
2256 Male, age 80, left hemisphere 110.3
2830 Female, age 67, right hemisphere 100.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 248.5
Samples: 152

Max nTPM: 797.0
Min nTPM: 98.6
Std nTPM: 99.3
Median nTPM: 227.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 797.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 634.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 607.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 582.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 494.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 462.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 457.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 441.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 431.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 421.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 402.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 393.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 366.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 357.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 352.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 342.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 323.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 322.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 321.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 321.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 314.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 313.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 310.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 304.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 304.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 303.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 300.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 297.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 297.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 296.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 295.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 293.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 292.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 292.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 288.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 286.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 284.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 284.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 281.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 281.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 280.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 277.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 275.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 274.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 273.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 272.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 271.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 271.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 270.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 269.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 267.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 266.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 263.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 263.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 263.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 257.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 253.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 252.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 250.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 250.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 248.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 245.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 245.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 244.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 240.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 239.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 237.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 235.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 233.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 233.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 231.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 230.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 230.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 229.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 229.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 227.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 227.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 227.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 225.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 225.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 222.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 220.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 219.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 218.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 216.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 214.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 213.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 213.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 212.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 210.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 209.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 209.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 208.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 208.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 206.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 206.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 205.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 204.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 203.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 201.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 199.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 198.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 198.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 198.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 193.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 193.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 192.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 192.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 189.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 188.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 185.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 183.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 182.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 181.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 179.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 178.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 176.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 173.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 172.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 169.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 168.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 168.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 166.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 166.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 164.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 163.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 163.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 157.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 156.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 156.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 153.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 145.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 143.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 142.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 139.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 137.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 136.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 136.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 132.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 126.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 119.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 98.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 164.5
FF:10151-102I7 76 years, female 164.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.6
Pig sample Sample description nTPM
Amygdala
nTPM: 87.7
Samples: 4

Max nTPM: 132.1
Min nTPM: 67.6
Sample A Female 132.1
Sample B Female 67.6
Sample C Male 74.8
Sample D Male 76.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 365.0
Samples: 4

Max nTPM: 392.9
Min nTPM: 351.6
Sample A Male 351.6
Sample B Male 359.8
Sample C Female 392.9
Sample D Female 355.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.4
70445676 Antisense, RP_050614_04_D01, Mouse strain C57BL/6J (56 days, male) 8.4

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