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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:188.1 nTPM
GTEx:188.1 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:76.2 nTPM
Mouse:365.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 188.1
Samples: 105

Max nTPM: 326.2
Min nTPM: 117.1
Std nTPM: 35.7
Median nTPM:
413_1 59 years, female 326.2
414_1 84 years, female 290.0
490_1 67 years, female 289.9
491_1 89 years, female 274.5
415_1 77 years, female 274.3
466_1 57 years, female 258.6
162_1 79 years, female 244.1
266_1 85 years, male 239.4
501_1 88 years, male 235.0
246_1 77 years, male 234.8
375_1 74 years, female 227.7
229_1 69 years, female 227.1
142_1 61 years, female 226.8
316_1 62 years, male 225.6
126_1 63 years, male 221.2
377_1 82 years, female 220.1
324_1 76 years, male 217.9
189_1 76 years, male 213.4
313_1 79 years, female 213.2
315_1 62 years, female 209.6
396_1 62 years, male 208.5
389_1 86 years, female 207.5
322_1 76 years, male 206.5
43_1 64 years, female 206.1
35_1 74 years, female 205.7
468_1 89 years, male 203.6
518_1 75 years, female 202.0
153_1 70 years, female 201.8
386_1 76 years, male 201.4
243_1 75 years, male 200.2
117_1 61 years, male 200.0
237_1 82 years, male 200.0
319_1 81 years, male 199.6
81_1 67 years, male 199.0
499_1 55 years, female 197.1
307_1 66 years, female 196.8
2_1 77 years, female 196.7
495_1 57 years, female 196.6
376_1 75 years, female 196.3
526_1 61 years, male 194.6
32_1 67 years, male 194.5
4_1 88 years, female 191.9
9_1 66 years, female 191.2
17_1 71 years, male 190.5
6_1 73 years, female 189.9
404_1 82 years, female 189.3
321_1 62 years, female 188.9
217_1 76 years, male 187.8
405_1 91 years, male 187.4
109_1 81 years, female 187.3
384_1 83 years, male 187.3
177_1 74 years, male 186.5
480_1 63 years, male 186.4
115_1 83 years, male 185.8
425_1 59 years, female 185.6
149_1 88 years, male 184.0
139_1 64 years, female 183.9
335_1 73 years, female 183.8
447_1 81 years, male 183.0
379_1 60 years, male 181.6
145_1 84 years, male 180.7
172_1 72 years, female 180.1
254_1 77 years, female 177.3
265_1 87 years, male 176.5
286_1 68 years, female 175.7
119_1 70 years, female 175.3
89_1 63 years, male 174.4
352_1 62 years, male 174.0
18_1 88 years, male 169.9
173_1 67 years, male 169.4
354_1 81 years, female 168.5
394_1 75 years, female 168.0
120_1 70 years, female 167.0
218_1 71 years, female 166.9
350_1 84 years, female 166.3
320_1 89 years, female 165.8
288_1 66 years, female 163.5
311_1 78 years, male 162.9
308_1 70 years, female 161.9
292_1 71 years, male 161.4
517_1 88 years, male 158.8
347_1 72 years, male 158.4
42_1 85 years, male 158.3
503_1 68 years, male 157.4
349_1 83 years, male 157.0
251_1 78 years, male 156.3
506_1 65 years, male 156.2
406_1 79 years, male 154.8
355_1 70 years, female 154.3
293_1 68 years, female 153.7
356_1 87 years, female 153.0
163_1 78 years, male 152.9
318_1 68 years, male 152.4
137_1 83 years, male 151.2
348_1 84 years, male 148.5
351_1 91 years, male 146.6
264_1 73 years, female 145.6
353_1 82 years, female 145.4
99_1 64 years, male 144.9
291_1 76 years, male 141.5
314_1 67 years, male 136.6
452_1 88 years, female 134.9
295_1 61 years, female 134.8
317_1 60 years, male 133.2
41_1 94 years, female 117.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 137.2
FF:10030-101E3 24-65 years, mixed 137.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Pig sample Sample description nTPM
Retina
nTPM: 76.2
Samples: 4

Max nTPM: 82.3
Min nTPM: 67.7
Sample A Female 77.1
Sample B Female 77.7
Sample C Male 82.3
Sample D Male 67.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.4
Mouse sample Sample description nTPM
Retina
nTPM: 365.4
Samples: 4

Max nTPM: 454.9
Min nTPM: 294.6
Sample A Male 386.5
Sample B Male 325.7
Sample C Female 454.9
Sample D Female 294.6

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