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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:121.4 nTPM
HPA Brain:77.5 nTPM
GTEx:121.4 nTPM
FANTOM5:148.1 Scaled Tags Per Million
Pig:66.4 nTPM
Mouse:107.2 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.5
Sample id Sample description nTPM
Amygdala
nTPM: 77.5
2814 Male, age 76, right hemisphere 112.5
2695 Female, age 67, right hemisphere 81.8
2514 Male, age 75, right hemisphere 76.8
1987 Female, age 91, left hemisphere 62.0
2517 Female, age 94, left hemisphere 54.3
Basal amygdala
nTPM: 54.5
2110 Male, age 80, left hemisphere 66.6
1955 Male, age 76, both hemispheres 65.4
2609 Male, age 75, right hemisphere 58.9
2685 Female, age 94, left hemisphere 49.4
2243 Female, age 91, right hemisphere 46.8
2827 Female, age 67, right hemisphere 39.8
Central amygdala
nTPM: 65.7
1905 Male, age 76, both hemispheres 99.2
2515 Male, age 75, right hemisphere 66.4
2826 Female, age 94, left hemisphere 62.6
2239 Male, age 80, left hemisphere 55.7
2701 Female, age 91, right hemisphere 44.8
Corticomedial amygdala
nTPM: 59.0
2240 Male, age 76, both hemispheres 72.2
2428 Male, age 75, right hemisphere 69.8
2829 Male, age 80, left hemisphere 65.3
2429 Female, age 94, left hemisphere 61.8
2242 Female, age 91, right hemisphere 45.1
2535 Female, age 67, right hemisphere 39.6
Lateral amygdala
nTPM: 59.5
1883 Male, age 76, both hemispheres 93.9
2516 Male, age 75, right hemisphere 74.4
2534 Female, age 94, left hemisphere 60.8
2256 Male, age 80, left hemisphere 46.4
2830 Female, age 67, right hemisphere 44.9
2255 Female, age 91, right hemisphere 36.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 121.4
Samples: 152

Max nTPM: 260.8
Min nTPM: 68.6
Std nTPM: 32.1
Median nTPM: 116.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 214.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 213.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 201.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 196.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 190.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 186.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 183.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 178.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 178.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 176.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 175.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 170.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 169.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 169.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 167.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 167.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 165.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 156.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 155.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 154.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 151.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 149.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 147.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 143.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 141.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 140.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 138.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 137.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 136.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 136.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 136.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 135.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 135.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 135.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 134.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 134.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 132.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 131.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 129.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 127.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 125.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 124.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 124.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 124.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 122.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 122.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 121.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 120.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 119.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 119.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 119.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 116.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 116.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 116.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 115.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 113.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 113.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 111.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 110.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 110.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 109.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 108.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 107.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 106.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 105.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 105.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 105.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 104.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 103.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 102.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 102.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 102.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 101.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 101.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 100.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 100.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 99.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 97.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 97.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 96.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 96.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 95.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 94.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 94.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 94.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 93.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 92.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 92.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 91.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 90.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 89.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 87.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 83.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 78.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 77.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 68.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 148.1
FF:10151-102I7 76 years, female 148.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.4
Pig sample Sample description nTPM
Amygdala
nTPM: 66.4
Samples: 4

Max nTPM: 86.1
Min nTPM: 49.9
Sample A Female 86.1
Sample B Female 72.4
Sample C Male 49.9
Sample D Male 57.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 107.2
Samples: 4

Max nTPM: 115.2
Min nTPM: 102.5
Sample A Male 115.2
Sample B Male 106.1
Sample C Female 102.5
Sample D Female 105.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
74635292 Antisense, RP_060215_03_F04, Mouse strain C57BL/6J (56 days, male) 5.3

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