HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:123.5 nTPM
HPA Brain:78.9 nTPM
GTEx:123.5 nTPM
FANTOM5:223.1 Scaled Tags Per Million
Pig:113.6 nTPM
Mouse:106.9 nTPM
Allen mouse:5.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019878Antibody HPA020096
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 78.9
Sample id Sample description nTPM
Hippocampus
nTPM: 66.3
1898 Male, age 80, left hemisphere 103.8
2529 Female, age 94, left hemisphere 66.0
1855 Male, age 76, left hemisphere 65.1
2621 Female, age 67, right hemisphere 63.4
1911 Female, age 85, right hemisphere 51.6
2148 Female, age 91, left hemisphere 47.7
Dentate gyrus
nTPM: 63.9
2530 Female, age 94, left hemisphere 74.0
2010 Male, age 76, both hemispheres 72.8
2528 Male, age 74, both hemispheres 63.6
1927 Female, age 91, both hemispheres 63.3
2246 Female, age 85, both hemispheres 61.7
2531 Female, age 67, both hemispheres 47.8
Entorhinal gyrus
nTPM: 59.9
1938 Female, age 85, left hemisphere 75.3
1787 Male, age 76, left hemisphere 68.9
2764 Male, age 80, right hemisphere 68.4
2117 Female, age 91, right hemisphere 59.4
2613 Female, age 94, left hemisphere 43.7
2686 Male, age 75, right hemisphere 43.5
Hippocampus, CA1
nTPM: 65.1
2749 Male, age 80, left hemisphere 89.3
1873 Female, age 85, both hemispheres 70.7
2527 Male, age 74, both hemispheres 66.7
2082 Female, age 91, right hemisphere 49.6
2045 Male, age 76, both hemispheres 49.3
Hippocampus, CA2
nTPM: 72.3
1963 Male, age 80, left hemisphere 91.2
2249 Male, age 74, both hemispheres 88.2
1892 Male, age 76, both hemispheres 79.6
1940 Female, age 85, left hemisphere 63.2
2437 Female, age 94, left hemisphere 62.1
2113 Female, age 91, right hemisphere 49.5
Hippocampus, CA3
nTPM: 58.4
1867 Male, age 76, both hemispheres 69.3
2436 Male, age 74, both hemispheres 67.8
1891 Female, age 85, both hemispheres 64.3
2137 Male, age 80, left hemisphere 62.9
2620 Female, age 94, left hemisphere 43.1
2861 Female, age 67, both hemispheres 42.8
Parahippocampal cortex
nTPM: 62.4
1850 Male, age 80, both hemispheres 93.8
1990 Female, age 91, right hemisphere 73.9
1933 Female, age 85, both hemispheres 70.6
2018 Male, age 76, both hemispheres 68.8
2250 Female, age 67, right hemisphere 68.1
2532 Female, age 72, left hemisphere 61.0
2693 Female, age 94, both hemispheres 56.8
2245 Female, age 91, both hemispheres 52.7
2692 Male, age 74, both hemispheres 44.6
2622 Female, age 67, right hemisphere 33.4
Perirhinal gyrus
nTPM: 78.9
1794 Male, age 80, right hemisphere 87.4
1841 Female, age 85, right hemisphere 85.3
1847 Female, age 91, left hemisphere 85.0
2848 Male, age 76, right hemisphere 71.4
2521 Female, age 94, right hemisphere 65.3
Subiculum
nTPM: 64.4
1977 Female, age 85, both hemispheres 79.1
2438 Female, age 94, left hemisphere 75.1
1901 Male, age 80, both hemispheres 65.9
2042 Male, age 76, both hemispheres 57.6
2729 Female, age 91, right hemisphere 54.8
2619 Male, age 74, both hemispheres 53.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 123.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 123.5
Samples: 197

Max nTPM: 272.8
Min nTPM: 69.1
Std nTPM: 28.5
Median nTPM: 119.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 272.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 229.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 209.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 207.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 207.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 178.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 178.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 171.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 169.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 167.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 167.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 223.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 223.1
FF:10169-103B7 60 years, female 304.3
FF:10153-102I9 76 years, female 141.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 113.6
Pig sample Sample description nTPM
Subiculum
nTPM: 79.1
Samples: 4

Max nTPM: 97.8
Min nTPM: 63.2
Sample A Female 97.8
Sample B Female 80.4
Sample C Male 63.2
Sample D Male 74.8
Dorsal hippocampus
nTPM: 113.6
Samples: 4

Max nTPM: 161.2
Min nTPM: 81.7
Sample A Female 161.2
Sample B Female 109.9
Sample C Male 101.6
Sample D Male 81.7
Entorhinal cortex
nTPM: 92.1
Samples: 4

Max nTPM: 125.5
Min nTPM: 74.5
Sample A Female 93.5
Sample B Female 125.5
Sample C Male 74.5
Sample D Male 75.0
Ventral hippocampus
nTPM: 91.3
Samples: 4

Max nTPM: 118.1
Min nTPM: 69.2
Sample A Female 118.1
Sample B Female 69.2
Sample C Male 84.5
Sample D Male 93.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 106.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.1
Samples: 4

Max nTPM: 111.7
Min nTPM: 96.9
Sample A Male 96.9
Sample B Male 105.8
Sample C Female 111.7
Sample D Female 106.1
Hippocampal formation
nTPM: 106.9
Samples: 4

Max nTPM: 116.7
Min nTPM: 100.1
Sample A Male 116.7
Sample B Male 100.1
Sample C Female 107.0
Sample D Female 103.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
74635292 Antisense, RP_060215_03_F04, Mouse strain C57BL/6J (56 days, male) 5.9

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