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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:321.9 nTPM
GTEx:321.9 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:137.4 nTPM
Mouse:246.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 321.9
Samples: 105

Max nTPM: 526.4
Min nTPM: 186.0
Std nTPM: 68.3
Median nTPM:
491_1 89 years, female 526.4
2_1 77 years, female 477.9
490_1 67 years, female 475.3
89_1 63 years, male 447.9
162_1 79 years, female 447.8
413_1 59 years, female 438.6
501_1 88 years, male 430.6
139_1 64 years, female 425.6
308_1 70 years, female 423.3
149_1 88 years, male 416.3
119_1 70 years, female 412.7
495_1 57 years, female 410.2
4_1 88 years, female 410.1
35_1 74 years, female 404.3
315_1 62 years, female 402.7
137_1 83 years, male 402.5
117_1 61 years, male 398.4
120_1 70 years, female 398.1
414_1 84 years, female 390.1
43_1 64 years, female 387.7
17_1 71 years, male 387.6
311_1 78 years, male 379.5
447_1 81 years, male 376.5
42_1 85 years, male 374.3
307_1 66 years, female 374.3
415_1 77 years, female 371.5
142_1 61 years, female 369.3
237_1 82 years, male 365.4
81_1 67 years, male 364.0
109_1 81 years, female 360.0
145_1 84 years, male 356.8
384_1 83 years, male 356.3
153_1 70 years, female 355.3
313_1 79 years, female 353.7
348_1 84 years, male 353.1
466_1 57 years, female 351.5
99_1 64 years, male 350.7
324_1 76 years, male 347.8
375_1 74 years, female 346.1
6_1 73 years, female 346.0
9_1 66 years, female 343.7
126_1 63 years, male 335.0
32_1 67 years, male 334.9
115_1 83 years, male 331.4
396_1 62 years, male 330.3
265_1 87 years, male 329.6
266_1 85 years, male 327.1
314_1 67 years, male 326.7
389_1 86 years, female 324.6
322_1 76 years, male 320.5
316_1 62 years, male 320.2
18_1 88 years, male 319.1
173_1 67 years, male 312.2
379_1 60 years, male 310.7
254_1 77 years, female 309.9
217_1 76 years, male 308.9
468_1 89 years, male 307.7
41_1 94 years, female 303.1
347_1 72 years, male 303.0
317_1 60 years, male 301.6
377_1 82 years, female 300.3
480_1 63 years, male 299.4
518_1 75 years, female 298.8
386_1 76 years, male 297.7
319_1 81 years, male 293.1
246_1 77 years, male 287.5
526_1 61 years, male 287.0
264_1 73 years, female 285.0
243_1 75 years, male 281.8
229_1 69 years, female 280.4
295_1 61 years, female 279.3
321_1 62 years, female 278.8
499_1 55 years, female 277.7
189_1 76 years, male 276.5
506_1 65 years, male 275.0
355_1 70 years, female 274.3
351_1 91 years, male 273.6
405_1 91 years, male 269.5
350_1 84 years, female 269.0
251_1 78 years, male 262.4
353_1 82 years, female 260.7
394_1 75 years, female 258.0
288_1 66 years, female 257.4
404_1 82 years, female 257.3
349_1 83 years, male 256.3
320_1 89 years, female 253.8
503_1 68 years, male 252.5
335_1 73 years, female 252.3
452_1 88 years, female 251.9
376_1 75 years, female 248.9
177_1 74 years, male 245.7
291_1 76 years, male 245.4
218_1 71 years, female 239.4
286_1 68 years, female 239.3
356_1 87 years, female 238.0
292_1 71 years, male 237.5
352_1 62 years, male 234.9
354_1 81 years, female 234.7
517_1 88 years, male 231.8
318_1 68 years, male 228.8
406_1 79 years, male 226.7
293_1 68 years, female 217.1
425_1 59 years, female 216.3
172_1 72 years, female 211.8
163_1 78 years, male 186.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 118.1
FF:10030-101E3 24-65 years, mixed 118.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
Pig sample Sample description nTPM
Retina
nTPM: 137.4
Samples: 4

Max nTPM: 156.8
Min nTPM: 125.3
Sample A Female 125.3
Sample B Female 135.4
Sample C Male 156.8
Sample D Male 131.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.5
Mouse sample Sample description nTPM
Retina
nTPM: 246.5
Samples: 4

Max nTPM: 295.7
Min nTPM: 220.4
Sample A Male 236.2
Sample B Male 233.8
Sample C Female 295.7
Sample D Female 220.4

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