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NPM1
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  • NPM1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:363.5 nTPM
HPA:306.5 nTPM
GTEx:363.5 nTPM
FANTOM5:252.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011384Antibody CAB012983
Endocrine cells High-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells High-
Paneth cells High-



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.5
overview
Male, age 65
Small intestine sample 232
nTPM: 359.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 280.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 293.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 293

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 363.5
Samples: 187

Max nTPM: 838.2
Min nTPM: 154.0
Std nTPM: 107.9
Median nTPM: 349.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 838.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 739.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 628.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 625.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 624.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 615.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 610.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 580.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 579.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 557.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 555.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 550.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 546.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 544.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 537.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 529.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 528.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 527.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 527.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 519.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 517.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 511.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 504.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 494.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 491.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 489.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 479.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 475.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 472.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 463.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 462.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 450.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 447.3
GTEX-1192X-2526-SM-59868 50-59 years, male 440.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 436.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 432.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 430.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 430.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 423.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 420.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 417.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 411.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 411.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 410.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 410.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 409.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 409.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 409.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 409.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 406.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 404.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 401.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 400.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 400.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 399.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 399.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 397.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 394.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 391.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 389.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 389.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 389.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 386.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 385.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 384.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 380.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 380.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 380.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 375.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 375.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 374.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 371.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 371.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 371.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 369.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 369.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 368.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 367.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 367.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 367.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 366.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 366.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 362.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 359.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 358.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 357.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 356.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 356.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 355.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 355.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 354.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 353.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 352.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 349.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 349.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 348.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 346.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 345.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 344.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 342.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 342.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 340.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 340.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 339.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 336.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 336.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 335.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 334.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 332.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 332.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 332.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 332.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 329.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 329.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 320.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 320.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 320.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 320.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 319.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 318.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 315.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 314.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 312.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 312.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 311.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 309.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 309.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 308.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 307.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 305.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 302.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 300.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 300.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 299.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 298.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 293.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 293.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 292.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 290.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 289.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 288.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 288.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 286.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 283.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 283.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 279.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 279.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 278.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 277.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 276.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 275.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 274.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 274.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 273.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 272.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 264.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 263.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 262.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 260.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 259.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 257.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 256.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 255.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 255.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 255.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 251.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 246.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 240.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 236.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 234.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 233.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 229.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 223.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 223.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 223.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 219.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 218.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 216.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 215.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 211.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 199.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 197.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 197.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 197.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 190.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 154.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 252.2
FF:10024-101D6 15,40,85 years, mixed 252.2

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