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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1218.0 nTPM
GTEx:1218.0 nTPM
FANTOM5:24.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046964Antibody HPA061798Antibody CAB004311
Squamous epithelial cells MediumMediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1218.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1218.0
Samples: 156

Max nTPM: 3325.2
Min nTPM: 306.5
Std nTPM: 689.7
Median nTPM: 1102.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3325.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2938.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2897.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2779.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2753.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2752.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2739.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2713.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2587.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2468.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2328.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2300.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2252.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2227.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2227.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2206.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2181.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2144.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2134.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2011.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1993.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1977.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1965.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1946.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1914.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1905.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 1897.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1889.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1872.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1861.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1860.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1839.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1834.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1830.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1816.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1806.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1805.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1749.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1728.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1688.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1680.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1651.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 1636.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1626.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1610.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1609.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1608.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1590.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1589.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1538.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1500.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1500.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1490.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1481.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1471.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1462.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1439.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1422.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1396.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1376.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1335.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1315.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1262.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1262.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1254.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1248.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1247.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1219.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1214.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1209.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1177.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1176.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1164.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1163.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1147.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1140.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1120.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1115.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1088.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1078.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1055.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1039.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1015.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 977.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 919.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 911.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 908.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 906.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 904.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 895.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 882.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 877.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 872.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 870.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 859.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 828.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 820.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 796.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 789.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 765.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 749.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 733.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 727.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 726.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 725.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 693.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 683.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 681.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 677.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 673.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 672.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 639.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 629.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 625.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 620.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 608.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 595.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 595.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 586.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 568.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 564.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 559.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 556.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 554.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 552.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 541.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 541.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 538.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 530.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 526.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 524.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 522.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 516.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 510.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 509.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 508.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 496.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 494.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 494.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 489.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 487.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 479.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 471.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 468.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 460.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 448.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 438.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 418.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 407.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 403.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 386.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 378.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 374.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 339.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 326.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 306.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 24.9
FF:10204-103F6 68 years, female 24.9

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