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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1026.5 nTPM
HPA Brain:347.2 nTPM
GTEx:1026.5 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:911.9 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.2
Sample id Sample description nTPM
Amygdala
nTPM: 347.2
2695 Female, age 67, right hemisphere 452.2
2514 Male, age 75, right hemisphere 358.5
2814 Male, age 76, right hemisphere 317.6
1987 Female, age 91, left hemisphere 307.6
2517 Female, age 94, left hemisphere 300.3
Basal amygdala
nTPM: 284.7
2827 Female, age 67, right hemisphere 393.2
2609 Male, age 75, right hemisphere 309.8
2685 Female, age 94, left hemisphere 273.4
2110 Male, age 80, left hemisphere 269.8
1955 Male, age 76, both hemispheres 237.5
2243 Female, age 91, right hemisphere 224.7
Central amygdala
nTPM: 310.4
2826 Female, age 94, left hemisphere 462.5
2515 Male, age 75, right hemisphere 309.6
1905 Male, age 76, both hemispheres 288.4
2239 Male, age 80, left hemisphere 246.5
2701 Female, age 91, right hemisphere 245.0
Corticomedial amygdala
nTPM: 279.6
2240 Male, age 76, both hemispheres 306.9
2535 Female, age 67, right hemisphere 300.8
2428 Male, age 75, right hemisphere 294.2
2829 Male, age 80, left hemisphere 274.4
2429 Female, age 94, left hemisphere 255.1
2242 Female, age 91, right hemisphere 246.2
Lateral amygdala
nTPM: 317.3
2830 Female, age 67, right hemisphere 481.3
2516 Male, age 75, right hemisphere 360.1
2534 Female, age 94, left hemisphere 339.0
2256 Male, age 80, left hemisphere 266.8
1883 Male, age 76, both hemispheres 244.0
2255 Female, age 91, right hemisphere 212.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1026.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1026.5
Samples: 152

Max nTPM: 2739.8
Min nTPM: 480.4
Std nTPM: 425.7
Median nTPM: 916.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2739.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2723.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2672.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2221.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2123.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2079.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1955.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1880.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1839.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1824.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1813.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1744.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1721.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1718.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1606.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1563.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1547.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1481.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1474.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1457.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1452.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1445.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1373.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1373.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1352.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1338.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1328.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1274.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1244.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1243.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1242.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1240.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1218.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1216.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1205.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1171.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1168.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1147.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1146.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1126.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1115.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1108.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1104.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1101.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1091.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1079.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1073.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1067.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1061.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1050.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1045.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1043.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1033.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1032.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1031.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1030.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1006.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1003.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 999.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 995.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 995.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 994.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 990.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 987.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 985.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 982.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 980.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 971.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 966.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 965.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 964.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 945.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 928.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 926.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 920.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 919.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 912.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 910.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 904.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 894.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 894.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 889.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 885.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 880.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 880.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 880.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 868.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 864.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 850.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 847.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 846.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 843.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 842.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 841.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 841.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 839.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 838.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 836.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 828.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 824.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 817.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 814.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 803.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 798.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 796.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 785.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 785.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 768.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 760.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 760.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 757.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 752.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 744.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 742.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 741.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 740.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 737.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 736.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 735.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 730.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 728.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 728.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 725.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 717.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 716.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 711.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 707.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 704.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 676.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 666.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 648.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 644.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 642.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 640.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 635.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 634.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 631.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 629.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 611.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 609.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 591.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 579.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 577.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 577.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 570.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 560.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 554.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 526.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 521.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 518.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 505.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 480.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 36.0
FF:10151-102I7 76 years, female 36.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.9
Pig sample Sample description nTPM
Amygdala
nTPM: 91.9
Samples: 4

Max nTPM: 119.1
Min nTPM: 55.1
Sample A Female 106.2
Sample B Female 119.1
Sample C Male 87.2
Sample D Male 55.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

911.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 912.0
Samples: 4

Max nTPM: 966.1
Min nTPM: 832.1
Sample A Male 832.1
Sample B Male 966.1
Sample C Female 926.9
Sample D Female 922.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
71763583 Antisense, RP_050921_02_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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