MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1000.2 nTPM
HPA Brain:334.5 nTPM
GTEx:1000.2 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:140.0 nTPM
Mouse:838.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 334.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 290.6
2666 Male, age 74, left hemisphere 353.8
1870 Female, age 42, unknown 339.3
2586 Male, age 75, left hemisphere 317.8
2828 Female, age 72, unknown 291.0
1833 Male, age 53, unknown 278.6
2411 Female, age 72, unknown 273.2
2019 Male, age 18, unknown 271.9
1827 Male, age 72, unknown 270.7
1830 Male, age 51, unknown 270.4
2219 Male, age 76, both hemispheres 239.2
Dorsal raphe nucleus
nTPM: 263.2
2016 Female, age 72, unknown 278.1
2750 Male, age 76, both hemispheres 273.8
1828 Male, age 53, unknown 269.5
2298 Female, age 72, unknown 268.6
2047 Male, age 72, unknown 226.0
Inferior colliculus
nTPM: 286.0
1890 Male, age 53, unknown 318.0
2849 Male, age 72, unknown 312.1
2097 Female, age 72, unknown 257.5
1848 Female, age 42, unknown 256.6
Median raphe nucleus
nTPM: 274.6
2220 Male, age 76, midline 274.6
Periaquaductal grey, anterior
nTPM: 270.7
2502 Female, age 75, unknown 321.8
1795 Male, age 51, unknown 257.7
1947 Male, age 18, unknown 232.5
Periaquaductal grey, dorsal
nTPM: 287.5
2850 Male, age 76, both hemispheres 334.4
1840 Male, age 53, unknown 291.4
1831 Male, age 72, unknown 267.0
2464 Female, age 72, unknown 257.0
Periaquaductal grey, lateral
nTPM: 258.4
2053 Male, age 18, unknown 300.3
2140 Male, age 76, both hemispheres 261.1
2272 Male, age 74, both hemispheres 213.8
Pretectal area
nTPM: 272.3
1815 Male, age 53, unknown 318.4
1817 Female, age 42, unknown 303.0
1816 Male, age 51, unknown 291.2
2825 Male, age 18, unknown 284.7
2407 Male, age 75, both hemispheres 270.1
2224 Female, age 72, unknown 269.9
1944 Female, age 72, unknown 267.9
2316 Male, age 76, right hemisphere 266.3
2007 Male, age 72, unknown 261.6
2667 Female, age 75, unknown 241.8
2273 Male, age 74, both hemispheres 219.9
Red nucleus
nTPM: 314.9
2503 Female, age 72, unknown 372.3
1865 Male, age 51, unknown 364.2
1904 Male, age 53, unknown 342.0
2584 Male, age 75, left hemisphere 340.4
1821 Female, age 72, unknown 333.9
2725 Female, age 75, unknown 326.8
2769 Male, age 72, unknown 302.4
2785 Male, age 18, unknown 296.4
2227 Male, age 72, unknown 285.0
2588 Male, age 74, left hemisphere 282.2
2823 Male, age 76, right hemisphere 267.8
1954 Female, age 42, unknown 264.9
Substantia nigra
nTPM: 334.5
2409 Female, age 72, unknown 441.1
2699 Male, age 18, unknown 402.7
2241 Male, age 72, unknown 385.0
2665 Male, age 74, both hemispheres 373.9
1851 Male, age 51, unknown 367.0
1889 Female, age 72, unknown 298.0
2590 Female, age 75, unknown 293.5
1916 Female, age 42, unknown 292.3
2583 Male, age 75, right hemisphere 266.7
1941 Male, age 53, unknown 224.6
Superior colliculus
nTPM: 293.1
1913 Female, age 42, unknown 383.8
2587 Male, age 74, left hemisphere 368.6
1995 Male, age 72, unknown 349.9
2668 Female, age 75, unknown 288.3
1796 Male, age 53, unknown 284.9
2664 Male, age 75, both hemispheres 277.0
1839 Male, age 51, unknown 256.1
2261 Male, age 18, unknown 246.5
2087 Female, age 72, unknown 238.6
1895 Male, age 76, right hemisphere 236.7
Ventral tegmental area
nTPM: 304.9
1915 Female, age 42, unknown 346.1
2223 Female, age 72, unknown 334.2
2021 Male, age 53, unknown 309.7
2410 Female, age 72, unknown 304.7
1942 Male, age 51, unknown 271.4
2218 Male, age 76, both hemispheres 263.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1000.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1000.2
Samples: 139

Max nTPM: 3434.5
Min nTPM: 298.9
Std nTPM: 452.7
Median nTPM: 884.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3434.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2505.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2443.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2375.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2237.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2220.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1839.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1651.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1642.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1635.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1620.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 140.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 140.0
Samples: 4

Max nTPM: 182.0
Min nTPM: 110.2
Sample A Female 182.0
Sample B Female 147.6
Sample C Male 110.2
Sample D Male 120.3
Midbrain
nTPM: 138.7
Samples: 4

Max nTPM: 218.6
Min nTPM: 85.9
Sample A Female 218.6
Sample B Female 148.8
Sample C Male 101.6
Sample D Male 85.9
Periaqueductal gray
nTPM: 110.7
Samples: 3

Max nTPM: 121.2
Min nTPM: 101.8
Sample B Female 121.2
Sample C Male 109.2
Sample D Male 101.8
Superior colliculi
nTPM: 132.2
Samples: 4

Max nTPM: 159.1
Min nTPM: 118.8
Sample A Female 159.1
Sample B Female 128.3
Sample C Male 122.6
Sample D Male 118.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 838.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 838.4
Samples: 4

Max nTPM: 918.7
Min nTPM: 752.9
Sample A Male 918.7
Sample B Male 821.0
Sample C Female 752.9
Sample D Female 861.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71763583 Antisense, RP_050921_02_C07, Mouse strain C57BL/6J (56 days, male) 0.5

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