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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
359.1
nTPM
FANTOM5:
31.6
Scaled Tags Per Million
Pig:
145.4
nTPM
Allen mouse:
0.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
359.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 342.8
2188
Female, age 91, both hemispheres
403.1
2301
Female, age 85, both hemispheres
366.4
2090
Male, age 80, both hemispheres
354.2
1984
Male, age 76, both hemispheres
247.5
Dorsal cochlear nucleus nTPM: 344.8
2802
Male, age 74, right hemisphere
403.1
2378
Male, age 80, both hemispheres
376.5
2187
Female, age 91, both hemispheres
371.8
2370
Male, age 61, both hemispheres
322.1
2058
Male, age 76, both hemispheres
250.4
Dorsal tegmental nucleus nTPM: 359.1
2358
Male, age 61, both hemispheres
487.0
2326
Male, age 74, both hemispheres
351.9
2083
Male, age 80, both hemispheres
341.6
1936
Male, age 76, left hemisphere
255.9
Dorsolateral tegmental area nTPM: 319.5
2337
Male, age 61, both hemispheres
394.7
2654
Male, age 80, both hemispheres
368.3
2751
Female, age 85, both hemispheres
311.5
2360
Male, age 74, both hemispheres
265.9
2141
Male, age 76, both hemispheres
257.4
Kolliker-Fuse nucleus nTPM: 339.6
2793
Female, age 91, left hemisphere
370.0
2315
Male, age 76, right hemisphere
363.4
2163
Male, age 80, both hemispheres
285.4
Lateral lemniscal nuclei nTPM: 240.5
2169
Male, age 76, both hemispheres
276.4
2320
Female, age 91, left hemisphere
239.6
2746
Female, age 85, left hemisphere
234.2
2453
Male, age 74, right hemisphere
233.6
2036
Male, age 80, both hemispheres
218.6
Lateral parabrachial nucleus nTPM: 342.5
2792
Male, age 76, both hemispheres
439.8
2013
Male, age 80, both hemispheres
344.2
2790
Male, age 61, both hemispheres
309.4
2139
Female, age 85, right hemisphere
276.4
Lateral vestibular nucleus nTPM: 309.2
2311
Male, age 80, both hemispheres
375.2
2184
Male, age 76, both hemispheres
243.2
Locus coeruleus nTPM: 267.9
2720
Male, age 74, both hemispheres
341.8
2788
Male, age 74, unknown
306.6
2162
Male, age 80, both hemispheres
303.1
2123
Female, age 91, both hemispheres
260.5
2317
Female, age 72, unknown
236.5
2014
Male, age 55, unknown
216.9
1980
Male, age 76, both hemispheres
210.0
Medial parabrachial nucleus nTPM: 322.5
2170
Female, age 91, both hemispheres
396.2
2854
Male, age 80, both hemispheres
364.8
2786
Male, age 76, both hemispheres
298.3
2156
Male, age 61, both hemispheres
282.9
2463
Female, age 85, right hemisphere
270.4
Medial periolivary nuclei nTPM: 261.2
2458
Female, age 91, both hemispheres
309.3
2081
Male, age 80, both hemispheres
282.1
2063
Male, age 76, both hemispheres
263.1
2791
Male, age 74, right hemisphere
245.6
2171
Female, age 85, both hemispheres
206.0
Motor facial nucleus nTPM: 270.2
2795
Female, age 91, both hemispheres
328.5
2697
Female, age 85, both hemispheres
326.2
2365
Male, age 74, right hemisphere
284.9
2126
Male, age 61, both hemispheres
264.9
2062
Male, age 76, both hemispheres
217.9
2327
Male, age 80, both hemispheres
198.6
Motor trigeminal nucleus nTPM: 281.6
2335
Male, age 61, both hemispheres
300.7
2321
Female, age 91, both hemispheres
295.1
2560
Male, age 74, both hemispheres
294.9
2309
Male, age 76, both hemispheres
284.3
2079
Male, age 80, both hemispheres
232.9
Nuclei of the trapezoid body nTPM: 243.5
1983
Male, age 76, both hemispheres
298.2
2166
Male, age 80, both hemispheres
269.5
2368
Female, age 91, both hemispheres
247.5
2159
Male, age 61, both hemispheres
222.8
2735
Female, age 85, both hemispheres
179.6
Nucleus raphe magnus nTPM: 246.6
2051
Male, age 76, both hemispheres
291.9
2459
Female, age 91, both hemispheres
276.6
2455
Male, age 74, both hemispheres
258.5
2328
Male, age 80, both hemispheres
244.7
2172
Female, age 85, both hemispheres
213.7
2160
Male, age 61, both hemispheres
194.0
Paramedian reticular nucleus nTPM: 309.3
2052
Male, age 76, both hemispheres
442.1
2313
Male, age 61, both hemispheres
281.4
2057
Male, age 80, both hemispheres
258.3
2050
Female, age 85, both hemispheres
255.2
Pedunculopontine tegmental nucleus nTPM: 326.5
2338
Male, age 61, both hemispheres
430.4
2334
Male, age 80, both hemispheres
328.9
1921
Female, age 85, both hemispheres
220.3
Pontine nuclei nTPM: 254.6
2319
Female, age 91, both hemispheres
304.1
2454
Male, age 74, left hemisphere
279.9
1863
Male, age 55, unknown
273.7
2109
Female, age 72, unknown
259.8
1968
Male, age 76, left hemisphere
254.0
2115
Male, age 80, left hemisphere
253.5
2787
Female, age 85, both hemispheres
237.4
2727
Male, age 61, right hemisphere
174.2
Pontine raphe nucleus nTPM: 244.8
2853
Male, age 76, midline
269.5
2122
Female, age 85, midline
220.1
Posteroventral cochlear nucleus nTPM: 347.1
2341
Male, age 80, both hemispheres
465.5
2135
Female, age 91, both hemispheres
372.6
2371
Male, age 61, both hemispheres
362.5
2070
Male, age 76, both hemispheres
291.0
2752
Female, age 85, both hemispheres
244.1
Principal sensory trigeminal nucleus nTPM: 235.0
2367
Female, age 91, left hemisphere
303.0
2324
Male, age 76, both hemispheres
238.6
2158
Male, age 61, both hemispheres
209.7
2008
Male, age 80, left hemisphere
188.7
Reticular pontine nucleus, caudal nTPM: 318.1
2457
Female, age 91, both hemispheres
437.5
2559
Male, age 74, both hemispheres
338.0
2092
Male, age 76, both hemispheres
310.3
2332
Male, age 80, right hemisphere
186.5
Reticular pontine nucleus, oral nTPM: 307.5
2366
Female, age 91, both hemispheres
362.6
2361
Male, age 74, both hemispheres
323.8
2167
Male, age 76, both hemispheres
311.4
1939
Male, age 80, both hemispheres
309.8
2012
Female, age 85, both hemispheres
229.9
Reticulotegmental nucleus nTPM: 277.8
2452
Male, age 74, both hemispheres
327.0
2322
Female, age 91, both hemispheres
289.7
2333
Male, age 80, both hemispheres
263.9
2325
Male, age 76, both hemispheres
230.4
Spinal trigeminal nucleus, oral nTPM: 261.2
2164
Male, age 80, both hemispheres
293.7
1978
Male, age 76, both hemispheres
270.5
2737
Female, age 85, both hemispheres
219.4
Subcoeruleus area nTPM: 288.1
2451
Male, age 74, both hemispheres
343.8
2369
Female, age 85, left hemisphere
324.4
1958
Male, age 80, both hemispheres
277.6
2323
Female, age 91, left hemisphere
263.9
2089
Male, age 76, left hemisphere
230.6
Superior olive nTPM: 273.2
2020
Male, age 76, both hemispheres
341.6
2561
Female, age 91, both hemispheres
306.4
2364
Male, age 74, right hemisphere
259.6
1875
Female, age 85, both hemispheres
233.2
2329
Male, age 80, right hemisphere
225.2
Ventral periolivary nuclei nTPM: 265.5
2023
Male, age 76, both hemispheres
314.5
2794
Female, age 91, left hemisphere
279.6
2165
Male, age 80, both hemispheres
263.5
2130
Female, age 85, both hemispheres
204.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 294.8
2840
Female, age 85, both hemispheres
344.1
2359
Male, age 61, both hemispheres
320.2
2161
Male, age 80, both hemispheres
308.4
1959
Male, age 76, both hemispheres
284.0
2456
Female, age 91, both hemispheres
271.6
2449
Male, age 74, both hemispheres
240.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.4
Pig sample
Sample description
nTPM
Pons nTPM: 145.4
Samples: 4
Max nTPM: 176.8
Min nTPM: 112.4
Sample A
Female
133.1
Sample B
Female
112.4
Sample C
Male
176.8
Sample D
Male
159.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
