MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:455.5 nTPM
HPA Brain:99.1 nTPM
GTEx:455.5 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:81.6 nTPM
Mouse:122.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.1
2411 Female, age 72, unknown 88.5
1827 Male, age 72, unknown 87.6
1870 Female, age 42, unknown 86.7
2828 Female, age 72, unknown 83.5
1833 Male, age 53, unknown 83.0
2019 Male, age 18, unknown 80.5
1830 Male, age 51, unknown 69.4
2219 Male, age 76, both hemispheres 67.3
2666 Male, age 74, left hemisphere 64.4
2586 Male, age 75, left hemisphere 59.8
Dorsal raphe nucleus
nTPM: 91.6
2298 Female, age 72, unknown 111.6
1828 Male, age 53, unknown 97.8
2047 Male, age 72, unknown 96.2
2016 Female, age 72, unknown 78.2
2750 Male, age 76, both hemispheres 74.5
Inferior colliculus
nTPM: 96.4
2097 Female, age 72, unknown 117.9
1890 Male, age 53, unknown 95.7
1848 Female, age 42, unknown 88.7
2849 Male, age 72, unknown 83.2
Median raphe nucleus
nTPM: 77.0
2220 Male, age 76, midline 77.0
Periaquaductal grey, anterior
nTPM: 83.5
1947 Male, age 18, unknown 105.4
1795 Male, age 51, unknown 77.5
2502 Female, age 75, unknown 67.6
Periaquaductal grey, dorsal
nTPM: 85.9
2850 Male, age 76, both hemispheres 100.3
1831 Male, age 72, unknown 88.5
1840 Male, age 53, unknown 84.2
2464 Female, age 72, unknown 70.5
Periaquaductal grey, lateral
nTPM: 81.4
2053 Male, age 18, unknown 92.5
2272 Male, age 74, both hemispheres 84.3
2140 Male, age 76, both hemispheres 67.4
Pretectal area
nTPM: 93.9
1944 Female, age 72, unknown 121.6
1817 Female, age 42, unknown 114.1
2007 Male, age 72, unknown 109.0
1815 Male, age 53, unknown 100.4
1816 Male, age 51, unknown 100.3
2273 Male, age 74, both hemispheres 96.2
2667 Female, age 75, unknown 89.9
2224 Female, age 72, unknown 89.6
2407 Male, age 75, both hemispheres 78.8
2825 Male, age 18, unknown 78.8
2316 Male, age 76, right hemisphere 53.8
Red nucleus
nTPM: 84.9
1821 Female, age 72, unknown 132.6
2725 Female, age 75, unknown 106.6
1865 Male, age 51, unknown 96.8
2823 Male, age 76, right hemisphere 91.8
1954 Female, age 42, unknown 84.1
1904 Male, age 53, unknown 79.9
2503 Female, age 72, unknown 75.6
2769 Male, age 72, unknown 75.0
2584 Male, age 75, left hemisphere 73.7
2227 Male, age 72, unknown 70.5
2785 Male, age 18, unknown 67.1
2588 Male, age 74, left hemisphere 65.4
Substantia nigra
nTPM: 99.1
1889 Female, age 72, unknown 123.6
1916 Female, age 42, unknown 116.0
1941 Male, age 53, unknown 110.4
2241 Male, age 72, unknown 109.5
1851 Male, age 51, unknown 103.0
2699 Male, age 18, unknown 102.2
2409 Female, age 72, unknown 93.8
2590 Female, age 75, unknown 90.2
2665 Male, age 74, both hemispheres 86.0
2583 Male, age 75, right hemisphere 56.0
Superior colliculus
nTPM: 83.3
2587 Male, age 74, left hemisphere 118.1
1895 Male, age 76, right hemisphere 111.0
2668 Female, age 75, unknown 85.4
2087 Female, age 72, unknown 85.3
1796 Male, age 53, unknown 73.6
1839 Male, age 51, unknown 73.5
1913 Female, age 42, unknown 73.2
1995 Male, age 72, unknown 72.7
2261 Male, age 18, unknown 72.5
2664 Male, age 75, both hemispheres 68.1
Ventral tegmental area
nTPM: 85.5
1915 Female, age 42, unknown 98.4
2410 Female, age 72, unknown 92.5
2218 Male, age 76, both hemispheres 90.3
1942 Male, age 51, unknown 81.7
2223 Female, age 72, unknown 81.7
2021 Male, age 53, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 455.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 455.5
Samples: 139

Max nTPM: 1202.0
Min nTPM: 234.5
Std nTPM: 133.2
Median nTPM: 439.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1202.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 988.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 807.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 716.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 708.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 700.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 686.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 668.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 663.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 642.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 635.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.8
Samples: 4

Max nTPM: 109.4
Min nTPM: 43.2
Sample A Female 109.4
Sample B Female 65.9
Sample C Male 84.6
Sample D Male 43.2
Midbrain
nTPM: 72.5
Samples: 4

Max nTPM: 81.1
Min nTPM: 63.9
Sample A Female 63.9
Sample B Female 79.1
Sample C Male 81.1
Sample D Male 65.8
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 66.0
Min nTPM: 41.4
Sample B Female 48.9
Sample C Male 66.0
Sample D Male 41.4
Superior colliculi
nTPM: 81.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 63.2
Sample A Female 88.6
Sample B Female 83.4
Sample C Male 91.0
Sample D Male 63.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 122.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 122.5
Samples: 4

Max nTPM: 142.0
Min nTPM: 110.4
Sample A Male 142.0
Sample B Male 119.9
Sample C Female 117.6
Sample D Female 110.4

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