We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NDUFB1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NDUFB1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:252.7 nTPM
GTEx:252.7 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:154.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 252.7
Samples: 105

Max nTPM: 377.9
Min nTPM: 128.2
Std nTPM: 42.6
Median nTPM:
375_1 74 years, female 377.9
265_1 87 years, male 338.3
35_1 74 years, female 336.7
162_1 79 years, female 334.0
377_1 82 years, female 327.5
413_1 59 years, female 321.3
142_1 61 years, female 320.6
414_1 84 years, female 318.3
379_1 60 years, male 316.5
501_1 88 years, male 312.2
396_1 62 years, male 311.4
490_1 67 years, female 309.6
17_1 71 years, male 301.9
384_1 83 years, male 295.4
4_1 88 years, female 294.6
313_1 79 years, female 290.6
394_1 75 years, female 290.1
237_1 82 years, male 289.4
126_1 63 years, male 288.8
246_1 77 years, male 287.5
415_1 77 years, female 287.0
389_1 86 years, female 286.3
117_1 61 years, male 286.0
386_1 76 years, male 284.2
153_1 70 years, female 282.4
115_1 83 years, male 282.3
229_1 69 years, female 279.7
466_1 57 years, female 279.2
324_1 76 years, male 277.9
120_1 70 years, female 277.6
145_1 84 years, male 276.2
319_1 81 years, male 276.1
491_1 89 years, female 276.1
217_1 76 years, male 272.2
254_1 77 years, female 270.1
43_1 64 years, female 269.8
376_1 75 years, female 269.4
243_1 75 years, male 268.5
266_1 85 years, male 268.5
81_1 67 years, male 268.4
526_1 61 years, male 264.7
468_1 89 years, male 264.2
149_1 88 years, male 262.2
89_1 63 years, male 261.7
286_1 68 years, female 259.7
119_1 70 years, female 258.7
517_1 88 years, male 258.0
315_1 62 years, female 256.8
518_1 75 years, female 255.7
499_1 55 years, female 254.0
264_1 73 years, female 253.5
109_1 81 years, female 253.3
18_1 88 years, male 253.2
480_1 63 years, male 251.8
9_1 66 years, female 251.2
189_1 76 years, male 250.7
347_1 72 years, male 249.7
2_1 77 years, female 249.5
354_1 81 years, female 248.5
139_1 64 years, female 247.9
452_1 88 years, female 244.9
316_1 62 years, male 243.6
447_1 81 years, male 242.1
42_1 85 years, male 241.6
353_1 82 years, female 241.3
163_1 78 years, male 240.2
32_1 67 years, male 240.1
322_1 76 years, male 239.6
503_1 68 years, male 237.6
352_1 62 years, male 237.1
137_1 83 years, male 233.7
172_1 72 years, female 231.7
506_1 65 years, male 231.6
321_1 62 years, female 229.4
356_1 87 years, female 229.1
406_1 79 years, male 229.1
335_1 73 years, female 228.8
349_1 83 years, male 227.4
99_1 64 years, male 226.8
6_1 73 years, female 225.6
288_1 66 years, female 224.3
404_1 82 years, female 218.0
173_1 67 years, male 217.9
251_1 78 years, male 214.3
425_1 59 years, female 213.5
177_1 74 years, male 213.0
292_1 71 years, male 212.0
311_1 78 years, male 211.5
405_1 91 years, male 209.4
350_1 84 years, female 208.8
351_1 91 years, male 207.7
355_1 70 years, female 205.0
218_1 71 years, female 204.7
320_1 89 years, female 196.5
314_1 67 years, male 195.1
348_1 84 years, male 190.4
295_1 61 years, female 189.7
318_1 68 years, male 188.8
307_1 66 years, female 188.0
495_1 57 years, female 184.1
317_1 60 years, male 181.7
291_1 76 years, male 178.4
308_1 70 years, female 172.1
293_1 68 years, female 170.1
41_1 94 years, female 128.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 62.9
FF:10030-101E3 24-65 years, mixed 62.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.3
Pig sample Sample description nTPM
Retina
nTPM: 46.3
Samples: 4

Max nTPM: 54.7
Min nTPM: 40.6
Sample A Female 41.2
Sample B Female 48.6
Sample C Male 54.7
Sample D Male 40.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.3
Mouse sample Sample description nTPM
Retina
nTPM: 154.3
Samples: 4

Max nTPM: 181.3
Min nTPM: 128.9
Sample A Male 181.3
Sample B Male 129.5
Sample C Female 177.5
Sample D Female 128.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org