We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ACTG1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ACTG1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:626.9 nTPM
FANTOM5:1656.6 Scaled Tags Per Million
Pig:1211.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041264Antibody HPA041271
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

626.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 626.9
Samples: 246

Max nTPM: 1405.5
Min nTPM: 312.2
Std nTPM: 165.4
Median nTPM: 597.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1405.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1265.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1158.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1045.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1023.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1003.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 991.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 977.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 970.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 934.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 918.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 914.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 906.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 884.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 883.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 883.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 878.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 876.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 865.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 865.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 861.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 858.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 848.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 848.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 844.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 840.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 839.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 835.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 833.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 829.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 821.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 816.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 815.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 813.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 803.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 802.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 795.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 791.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 788.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 784.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 782.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 779.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 773.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 772.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 772.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 770.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 766.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 761.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 759.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 755.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 752.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 748.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 745.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 745.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 742.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 739.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 731.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 731.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 731.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 730.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 729.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 727.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 726.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 721.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 719.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 717.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 715.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 711.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 708.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 708.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 707.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 706.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 702.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 702.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 698.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 692.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 691.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 691.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 689.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 684.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 678.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 675.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 675.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 674.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 673.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 669.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 666.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 665.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 664.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 664.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 658.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 655.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 652.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 649.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 649.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 647.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 646.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 645.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 644.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 644.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 644.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 642.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 638.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 631.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 631.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 630.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 628.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 626.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 625.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 625.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 625.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 622.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 608.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 608.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 608.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 607.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 605.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 604.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 603.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 601.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 600.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 598.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 597.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 596.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 595.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 594.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 592.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 590.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 589.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 589.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 587.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 585.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 585.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 584.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 581.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 579.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 578.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 577.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 576.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 576.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 574.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 573.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 569.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 568.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 567.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 567.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 566.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 565.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 564.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 564.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 562.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 561.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 560.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 558.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 556.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 556.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 550.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 549.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 548.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 548.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 547.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 547.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 545.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 542.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 540.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 537.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 536.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 536.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 532.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 532.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 531.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 529.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 523.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 518.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 518.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 517.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 516.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 515.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 512.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 512.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 512.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 512.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 512.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 511.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 507.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 507.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 507.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 504.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 504.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 503.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 503.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 501.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 494.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 491.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 490.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 488.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 483.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 483.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 481.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 479.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 478.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 477.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 474.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 472.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 469.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 469.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 468.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 466.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 465.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 461.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 457.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 457.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 454.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 452.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 450.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 449.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 448.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 448.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 446.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 445.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 444.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 444.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 435.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 434.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 430.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 425.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 423.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 423.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 422.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 421.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 416.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 416.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 407.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 406.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 398.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 394.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 391.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 390.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 388.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 381.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 379.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 373.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 372.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 360.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 358.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 312.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1656.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1656.6
FF:10164-103B2 76 years, female 1656.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1211.1
Pig sample Sample description nTPM
Caudate
nTPM: 1211.1
Samples: 4

Max nTPM: 1438.0
Min nTPM: 1043.2
Sample A Female 1112.7
Sample B Female 1250.6
Sample C Male 1438.0
Sample D Male 1043.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org