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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1522.6 nTPM
GTEx:1522.6 nTPM
FANTOM5:1728.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041264Antibody HPA041271
Squamous epithelial cells MediumNot detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1522.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1522.6
Samples: 156

Max nTPM: 7189.0
Min nTPM: 635.1
Std nTPM: 720.9
Median nTPM: 1345.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 7189.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3376.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3296.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 3191.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3075.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2936.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2925.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2887.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2816.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2464.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2386.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2373.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2372.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2339.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2322.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2295.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2280.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2256.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2231.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2218.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2215.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2210.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2201.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2166.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2142.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2089.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2075.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2021.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1970.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1943.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1853.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1842.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1830.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1790.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1783.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1776.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1770.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1767.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1765.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1753.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1724.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1700.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1655.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1650.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1625.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1621.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1615.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1612.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1611.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1603.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1601.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1599.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1584.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1584.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1564.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1558.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1542.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1540.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1536.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1534.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1534.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1517.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1500.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1472.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1439.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1436.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1435.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1434.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1424.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1415.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1404.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1389.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1374.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1373.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1356.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1355.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1351.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1345.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1345.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1340.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1333.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1303.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1301.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1297.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1287.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1284.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1280.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1267.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1267.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1247.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1237.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1223.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1213.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1212.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1212.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1207.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1200.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1200.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1199.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1190.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1186.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1178.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1178.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1171.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1165.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1157.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1157.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1146.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1146.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1144.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1142.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1139.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1133.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1122.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1109.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1109.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1108.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1101.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1099.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1099.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1092.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1083.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1078.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1077.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1046.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1029.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1016.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1015.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1014.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1003.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1000.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1000.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 994.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 992.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 982.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 981.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 973.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 930.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 930.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 925.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 915.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 903.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 901.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 896.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 883.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 872.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 857.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 842.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 837.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 821.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 754.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 744.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 740.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 735.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 727.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 635.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1728.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1728.7
FF:10204-103F6 68 years, female 1728.7

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