We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ACTG1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ACTG1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:997.6 nTPM
HPA:997.6 nTPM
GTEx:940.3 nTPM
FANTOM5:3531.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041264Antibody HPA041271
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -High
Glandular cells High-
Goblet cells -Not detected
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

997.6
overview
Male, age 65
Small intestine sample 232
nTPM: 1000.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 942.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1043.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1004.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

940.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 940.3
Samples: 187

Max nTPM: 1908.5
Min nTPM: 478.4
Std nTPM: 247.4
Median nTPM: 907.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1908.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1793.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1681.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1653.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1433.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1411.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1403.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1400.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1388.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1358.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1341.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1333.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1300.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1296.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1294.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1293.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1277.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1268.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1267.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1264.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1264.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1249.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1242.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1235.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1231.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1210.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 1209.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1188.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1184.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1183.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1172.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1168.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1157.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1153.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1152.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1150.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1138.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1131.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1128.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1128.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1120.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1116.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1114.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1111.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1107.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1107.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1102.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1102.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1100.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1098.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1095.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1092.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1090.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1089.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1082.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1063.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1044.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1043.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1041.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1036.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1036.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1035.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1034.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1033.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 995.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 990.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 989.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 984.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 984.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 983.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 982.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 980.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 976.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 975.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 971.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 965.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 962.0
GTEX-1192X-2526-SM-59868 50-59 years, male 960.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 954.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 947.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 937.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 936.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 935.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 928.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 926.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 923.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 923.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 921.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 919.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 914.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 913.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 913.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 910.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 907.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 907.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 903.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 896.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 896.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 895.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 895.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 889.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 887.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 884.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 883.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 881.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 880.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 875.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 873.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 871.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 871.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 869.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 860.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 855.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 852.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 849.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 848.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 838.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 834.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 824.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 817.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 808.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 806.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 803.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 799.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 794.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 790.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 790.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 785.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 780.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 777.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 769.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 767.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 766.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 766.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 765.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 761.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 760.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 759.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 758.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 756.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 749.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 739.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 737.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 735.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 731.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 730.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 730.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 729.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 728.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 717.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 713.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 710.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 706.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 702.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 698.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 697.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 695.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 695.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 691.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 690.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 684.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 674.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 672.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 669.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 669.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 665.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 661.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 660.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 660.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 658.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 651.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 649.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 649.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 646.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 636.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 630.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 617.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 614.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 612.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 610.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 597.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 586.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 584.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 562.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 547.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 483.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 478.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3531.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3531.2
FF:10024-101D6 15,40,85 years, mixed 3531.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org