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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:296.8 nTPM
HPA:27.8 nTPM
GTEx:296.8 nTPM
FANTOM5:285.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004337
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.8
overview
Male, age 65
Small intestine sample 232
nTPM: 20.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 27.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 24.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 39

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 296.8
Samples: 187

Max nTPM: 1269.5
Min nTPM: 77.1
Std nTPM: 176.4
Median nTPM: 252.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1269.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1062.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 833.0
GTEX-1192X-2526-SM-59868 50-59 years, male 784.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 742.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 727.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 712.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 704.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 639.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 599.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 580.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 573.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 570.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 563.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 546.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 539.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 538.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 530.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 527.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 509.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 508.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 502.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 491.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 484.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 476.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 458.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 456.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 454.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 451.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 450.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 443.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 440.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 425.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 420.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 410.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 406.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 406.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 397.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 396.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 391.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 383.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 381.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 375.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 375.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 371.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 368.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 367.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 364.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 357.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 357.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 355.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 350.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 347.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 346.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 344.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 341.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 340.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 333.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 332.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 321.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 315.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 313.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 312.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 312.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 311.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 310.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 309.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 308.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 307.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 307.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 306.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 305.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 305.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 301.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 299.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 298.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 297.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 297.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 294.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 294.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 293.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 292.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 290.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 289.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 283.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 280.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 274.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 269.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 267.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 265.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 260.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 255.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 254.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 252.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 251.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 245.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 243.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 241.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 240.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 240.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 239.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 238.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 236.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 234.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 233.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 232.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 231.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 231.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 229.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 229.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 227.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 225.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 224.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 217.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 217.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 215.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 214.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 213.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 212.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 208.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 207.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 206.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 206.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 205.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 203.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 203.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 199.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 198.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 198.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 196.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 193.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 190.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 189.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 187.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 187.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 186.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 186.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 182.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 180.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 180.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 175.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 174.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 171.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 169.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 166.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 166.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 160.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 160.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 156.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 153.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 151.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 150.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 146.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 145.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 144.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 143.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 141.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 140.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 138.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 138.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 136.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 133.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 130.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 127.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 123.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 123.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 122.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 119.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 118.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 118.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 117.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 116.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 115.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 114.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 110.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 107.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 104.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 102.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 101.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 100.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 97.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 95.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 94.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 92.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 87.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 77.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

285.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 285.9
FF:10024-101D6 15,40,85 years, mixed 285.9

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