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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:173.9 nTPM
HPA Brain:29.0 nTPM
GTEx:173.9 nTPM
FANTOM5:338.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 19.2
1981 Female, age 72, midline 23.4
2565 Male, age 75, midline 20.7
2816 Male, age 47, midline 18.4
2048 Male, age 55, midline 16.8
2194 Female, age 79, both hemispheres 16.7
Cervical spinal cord, dorsal horn
nTPM: 18.8
1877 Male, age 55, unknown 21.2
2296 Male, age 66, both hemispheres 20.8
2069 Male, age 47, both hemispheres 20.1
2173 Female, age 72, unknown 19.4
2297 Male, age 75, both hemispheres 16.5
2721 Male, age 90, both hemispheres 14.6
Cervical spinal cord, ventral horn
nTPM: 29.0
2809 Male, age 90, both hemispheres 52.0
2098 Female, age 72, unknown 35.7
2480 Male, age 75, both hemispheres 28.8
2068 Male, age 55, unknown 23.8
2295 Male, age 66, both hemispheres 20.9
2820 Female, age 79, both hemispheres 13.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 173.9
Samples: 159

Max nTPM: 683.4
Min nTPM: 44.4
Std nTPM: 124.2
Median nTPM: 129.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 683.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 676.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 584.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 494.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 468.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 448.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 442.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 439.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 410.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 406.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 380.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 350.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 345.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 338.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 333.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 332.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 331.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 331.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 330.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 326.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 325.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 323.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 304.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 303.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 296.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 291.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 287.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 282.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 276.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 273.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 268.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 264.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 260.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 259.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 257.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 255.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 252.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 252.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 241.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 237.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 237.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 232.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 230.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 230.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 225.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 221.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 210.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 207.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 200.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 200.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 193.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 191.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 190.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 190.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 188.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 186.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 183.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 178.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 178.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 177.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 169.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 163.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 161.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 161.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 158.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 157.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 155.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 155.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 148.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 143.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 142.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 141.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 138.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 133.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 129.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 129.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 125.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 123.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 121.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 120.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 115.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 115.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 113.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 111.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 111.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 108.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 107.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 105.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 104.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 103.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 102.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 100.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 98.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 97.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 96.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 91.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 90.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 90.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 89.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 89.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 86.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 84.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 83.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 81.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 80.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 79.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 78.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 78.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 77.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 75.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 74.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 73.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 73.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 71.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 70.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 69.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 68.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 66.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 65.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 65.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 62.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 62.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 61.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 59.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 59.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 58.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 57.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 57.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 57.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 55.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 54.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 53.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 52.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 49.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 48.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 48.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 47.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 46.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 44.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

338.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 338.6
FF:10181-103D1 60 years, female 353.3
FF:10159-103A6 76 years, female 323.9

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