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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:123.8 nTPM
HPA Brain:196.4 nTPM
GTEx:123.8 nTPM
FANTOM5:164.3 Scaled Tags Per Million
Mouse:158.6 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.4
Sample id Sample description nTPM
Amygdala
nTPM: 191.5
2814 Male, age 76, right hemisphere 243.5
2695 Female, age 67, right hemisphere 210.0
1987 Female, age 91, left hemisphere 169.6
2514 Male, age 75, right hemisphere 167.5
2517 Female, age 94, left hemisphere 167.1
Basal amygdala
nTPM: 178.3
2827 Female, age 67, right hemisphere 188.4
2685 Female, age 94, left hemisphere 185.5
1955 Male, age 76, both hemispheres 183.3
2609 Male, age 75, right hemisphere 182.2
2243 Female, age 91, right hemisphere 166.0
2110 Male, age 80, left hemisphere 164.5
Central amygdala
nTPM: 196.4
1905 Male, age 76, both hemispheres 215.3
2826 Female, age 94, left hemisphere 212.4
2515 Male, age 75, right hemisphere 190.8
2701 Female, age 91, right hemisphere 185.0
2239 Male, age 80, left hemisphere 178.3
Corticomedial amygdala
nTPM: 157.1
2535 Female, age 67, right hemisphere 171.0
2428 Male, age 75, right hemisphere 159.6
2242 Female, age 91, right hemisphere 159.4
2829 Male, age 80, left hemisphere 155.4
2240 Male, age 76, both hemispheres 149.2
2429 Female, age 94, left hemisphere 147.8
Lateral amygdala
nTPM: 196.0
1883 Male, age 76, both hemispheres 209.1
2534 Female, age 94, left hemisphere 199.5
2255 Female, age 91, right hemisphere 199.4
2256 Male, age 80, left hemisphere 198.2
2830 Female, age 67, right hemisphere 191.3
2516 Male, age 75, right hemisphere 178.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.8
Samples: 152

Max nTPM: 181.7
Min nTPM: 65.1
Std nTPM: 21.8
Median nTPM: 125.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 181.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 170.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 168.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 163.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 163.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 161.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 158.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 157.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 156.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 156.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 155.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 155.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 155.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 152.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 148.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 145.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 144.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 144.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 144.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 143.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 143.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 142.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 141.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 140.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 139.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 138.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 137.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 136.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 136.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 135.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 134.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 134.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 134.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 133.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 133.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 132.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 131.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 130.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 129.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 127.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 126.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 126.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 126.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 125.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 125.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 124.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 123.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 123.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 123.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 122.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 122.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 122.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 121.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 119.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 119.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 118.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 118.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 118.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 118.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 117.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 116.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 115.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 115.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 113.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 113.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 111.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 110.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 110.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 109.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 108.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 107.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 106.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 105.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 105.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 105.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 103.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 102.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 101.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 101.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 101.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 99.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 99.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 95.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 95.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 95.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 94.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 94.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 93.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 91.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 88.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 85.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 83.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 76.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 67.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 65.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 164.3
FF:10151-102I7 76 years, female 164.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 158.6
Samples: 4

Max nTPM: 185.8
Min nTPM: 145.2
Sample A Male 155.7
Sample B Male 147.7
Sample C Female 185.8
Sample D Female 145.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
69816739 Antisense, RP_050510_01_G07, Mouse strain C57BL/6J (56 days, male) 30.9
69448990 Antisense, RP_050419_03_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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