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  • RAB11B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:163.8 nTPM
HPA Brain:223.0 nTPM
GTEx:163.8 nTPM
FANTOM5:163.2 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 212.5
2565 Male, age 75, midline 232.2
2194 Female, age 79, both hemispheres 229.7
2816 Male, age 47, midline 223.5
1981 Female, age 72, midline 202.9
2048 Male, age 55, midline 174.4
Cervical spinal cord, dorsal horn
nTPM: 202.9
2296 Male, age 66, both hemispheres 239.3
2173 Female, age 72, unknown 216.4
2721 Male, age 90, both hemispheres 203.9
1877 Male, age 55, unknown 192.4
2297 Male, age 75, both hemispheres 186.5
2069 Male, age 47, both hemispheres 178.6
Cervical spinal cord, ventral horn
nTPM: 223.0
2820 Female, age 79, both hemispheres 256.2
2068 Male, age 55, unknown 235.9
2295 Male, age 66, both hemispheres 223.9
2480 Male, age 75, both hemispheres 219.2
2809 Male, age 90, both hemispheres 206.1
2098 Female, age 72, unknown 196.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 163.8
Samples: 159

Max nTPM: 278.0
Min nTPM: 94.7
Std nTPM: 35.3
Median nTPM: 159.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 278.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 269.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 259.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 251.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 250.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 242.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 228.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 227.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 227.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 224.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 223.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 223.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 221.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 218.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 213.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 211.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 208.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 208.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 205.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 204.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 200.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 199.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 199.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 197.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 196.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 192.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 191.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 190.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 190.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 190.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 190.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 189.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 187.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 187.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 185.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 185.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 184.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 183.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 182.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 182.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 181.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 181.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 180.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 180.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 179.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 178.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 176.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 176.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 175.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 175.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 175.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 173.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 172.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 171.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 171.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 171.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 170.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 168.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 165.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 164.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 164.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 163.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 163.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 163.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 163.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 162.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 162.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 161.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 161.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 159.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 158.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 158.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 157.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 157.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 156.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 156.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 156.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 155.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 155.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 154.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 153.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 153.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 152.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 152.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 152.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 151.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 151.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 150.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 149.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 148.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 148.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 147.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 147.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 146.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 145.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 145.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 144.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 144.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 144.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 143.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 143.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 142.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 142.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 141.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 141.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 139.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 139.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 138.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 137.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 137.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 136.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 135.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 135.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 135.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 131.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 130.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 129.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 128.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 127.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 127.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 126.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 122.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 121.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 121.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 121.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 120.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 120.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 119.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 118.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 117.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 112.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 112.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 105.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 99.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 94.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 163.2
FF:10181-103D1 60 years, female 168.7
FF:10159-103A6 76 years, female 157.7

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