MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:144.1 nTPM
HPA Brain:247.4 nTPM
GTEx:144.1 nTPM
FANTOM5:210.4 Scaled Tags Per Million
Mouse:123.1 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 247.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 227.6
2586 Male, age 75, left hemisphere 269.4
2019 Male, age 18, unknown 250.1
1833 Male, age 53, unknown 230.3
2666 Male, age 74, left hemisphere 227.4
2828 Female, age 72, unknown 225.4
1830 Male, age 51, unknown 224.7
2411 Female, age 72, unknown 219.4
1870 Female, age 42, unknown 216.0
1827 Male, age 72, unknown 208.4
2219 Male, age 76, both hemispheres 204.7
Dorsal raphe nucleus
nTPM: 197.0
2750 Male, age 76, both hemispheres 227.2
1828 Male, age 53, unknown 213.9
2047 Male, age 72, unknown 188.4
2016 Female, age 72, unknown 187.4
2298 Female, age 72, unknown 167.9
Inferior colliculus
nTPM: 195.5
2849 Male, age 72, unknown 214.5
1848 Female, age 42, unknown 200.6
1890 Male, age 53, unknown 193.8
2097 Female, age 72, unknown 173.1
Median raphe nucleus
nTPM: 207.6
2220 Male, age 76, midline 207.6
Periaquaductal grey, anterior
nTPM: 214.6
2502 Female, age 75, unknown 232.3
1947 Male, age 18, unknown 210.0
1795 Male, age 51, unknown 201.6
Periaquaductal grey, dorsal
nTPM: 183.6
2850 Male, age 76, both hemispheres 208.4
2464 Female, age 72, unknown 188.4
1831 Male, age 72, unknown 182.1
1840 Male, age 53, unknown 155.4
Periaquaductal grey, lateral
nTPM: 190.0
2272 Male, age 74, both hemispheres 212.7
2140 Male, age 76, both hemispheres 197.0
2053 Male, age 18, unknown 160.4
Pretectal area
nTPM: 210.8
2007 Male, age 72, unknown 249.6
1817 Female, age 42, unknown 237.9
2667 Female, age 75, unknown 224.6
1815 Male, age 53, unknown 222.6
1944 Female, age 72, unknown 212.5
2407 Male, age 75, both hemispheres 210.7
1816 Male, age 51, unknown 209.4
2316 Male, age 76, right hemisphere 196.3
2825 Male, age 18, unknown 190.8
2273 Male, age 74, both hemispheres 187.0
2224 Female, age 72, unknown 177.1
Red nucleus
nTPM: 247.4
2785 Male, age 18, unknown 267.8
2227 Male, age 72, unknown 261.3
2769 Male, age 72, unknown 261.1
1904 Male, age 53, unknown 260.4
1865 Male, age 51, unknown 260.1
2588 Male, age 74, left hemisphere 255.6
2584 Male, age 75, left hemisphere 246.5
1821 Female, age 72, unknown 239.9
2823 Male, age 76, right hemisphere 239.8
2503 Female, age 72, unknown 238.3
1954 Female, age 42, unknown 229.1
2725 Female, age 75, unknown 209.1
Substantia nigra
nTPM: 206.4
2699 Male, age 18, unknown 237.7
1916 Female, age 42, unknown 226.6
1941 Male, age 53, unknown 222.0
1851 Male, age 51, unknown 219.5
2583 Male, age 75, right hemisphere 215.8
1889 Female, age 72, unknown 215.0
2665 Male, age 74, both hemispheres 211.9
2590 Female, age 75, unknown 203.2
2409 Female, age 72, unknown 162.2
2241 Male, age 72, unknown 150.3
Superior colliculus
nTPM: 213.4
2664 Male, age 75, both hemispheres 239.9
1913 Female, age 42, unknown 225.3
1995 Male, age 72, unknown 224.2
2668 Female, age 75, unknown 218.0
1796 Male, age 53, unknown 214.6
1839 Male, age 51, unknown 207.1
2087 Female, age 72, unknown 206.8
2261 Male, age 18, unknown 202.1
1895 Male, age 76, right hemisphere 200.0
2587 Male, age 74, left hemisphere 196.2
Ventral tegmental area
nTPM: 210.5
2223 Female, age 72, unknown 235.2
2218 Male, age 76, both hemispheres 225.5
2410 Female, age 72, unknown 222.5
1942 Male, age 51, unknown 205.0
1915 Female, age 42, unknown 192.5
2021 Male, age 53, unknown 182.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 144.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 144.1
Samples: 139

Max nTPM: 226.0
Min nTPM: 76.8
Std nTPM: 22.1
Median nTPM: 143.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 226.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 198.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 195.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 195.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 191.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 189.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 187.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 180.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 180.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 178.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 172.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 210.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.4
FF:10158-103A5 76 years, female 210.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 123.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.1
Samples: 4

Max nTPM: 133.4
Min nTPM: 114.6
Sample A Male 133.4
Sample B Male 114.6
Sample C Female 117.4
Sample D Female 127.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
69816739 Antisense, RP_050510_01_G07, Mouse strain C57BL/6J (56 days, male) 23.8
69448990 Antisense, RP_050419_03_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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