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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:257.4 nTPM
GTEx:257.4 nTPM
FANTOM5:145.5 Scaled Tags Per Million
Mouse:382.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 257.4
Samples: 105

Max nTPM: 433.8
Min nTPM: 172.4
Std nTPM: 48.1
Median nTPM:
491_1 89 years, female 433.8
413_1 59 years, female 407.9
501_1 88 years, male 371.5
490_1 67 years, female 354.5
139_1 64 years, female 350.3
315_1 62 years, female 334.1
415_1 77 years, female 323.1
495_1 57 years, female 321.7
308_1 70 years, female 319.0
466_1 57 years, female 314.5
229_1 69 years, female 312.5
43_1 64 years, female 308.1
384_1 83 years, male 307.3
414_1 84 years, female 307.3
173_1 67 years, male 306.5
142_1 61 years, female 299.5
89_1 63 years, male 299.4
17_1 71 years, male 299.2
379_1 60 years, male 298.9
145_1 84 years, male 298.7
137_1 83 years, male 297.9
375_1 74 years, female 294.6
119_1 70 years, female 293.5
307_1 66 years, female 293.3
42_1 85 years, male 293.2
149_1 88 years, male 291.8
35_1 74 years, female 289.5
81_1 67 years, male 287.8
237_1 82 years, male 287.7
32_1 67 years, male 281.4
162_1 79 years, female 277.3
218_1 71 years, female 276.0
126_1 63 years, male 275.4
311_1 78 years, male 275.2
322_1 76 years, male 274.4
518_1 75 years, female 274.3
313_1 79 years, female 273.7
396_1 62 years, male 271.8
41_1 94 years, female 270.7
288_1 66 years, female 267.2
4_1 88 years, female 267.0
109_1 81 years, female 264.9
120_1 70 years, female 263.9
404_1 82 years, female 263.5
321_1 62 years, female 262.2
386_1 76 years, male 262.1
295_1 61 years, female 262.0
266_1 85 years, male 260.8
18_1 88 years, male 258.7
377_1 82 years, female 256.9
314_1 67 years, male 256.8
324_1 76 years, male 256.5
452_1 88 years, female 256.5
447_1 81 years, male 256.4
347_1 72 years, male 256.3
265_1 87 years, male 253.9
117_1 61 years, male 253.6
2_1 77 years, female 253.0
348_1 84 years, male 252.8
189_1 76 years, male 252.1
153_1 70 years, female 246.8
389_1 86 years, female 243.2
316_1 62 years, male 241.6
6_1 73 years, female 238.8
99_1 64 years, male 238.3
243_1 75 years, male 237.7
317_1 60 years, male 237.2
506_1 65 years, male 237.1
405_1 91 years, male 236.0
264_1 73 years, female 235.2
480_1 63 years, male 233.8
115_1 83 years, male 233.5
468_1 89 years, male 233.3
376_1 75 years, female 232.5
246_1 77 years, male 228.1
526_1 61 years, male 224.0
499_1 55 years, female 222.6
349_1 83 years, male 219.7
177_1 74 years, male 216.4
9_1 66 years, female 216.1
335_1 73 years, female 214.6
217_1 76 years, male 214.1
425_1 59 years, female 213.3
254_1 77 years, female 212.5
319_1 81 years, male 212.3
394_1 75 years, female 212.0
406_1 79 years, male 210.9
251_1 78 years, male 209.0
172_1 72 years, female 208.8
351_1 91 years, male 207.7
286_1 68 years, female 203.8
517_1 88 years, male 203.6
353_1 82 years, female 202.4
318_1 68 years, male 201.8
291_1 76 years, male 201.0
355_1 70 years, female 193.5
320_1 89 years, female 193.2
163_1 78 years, male 191.8
503_1 68 years, male 190.1
292_1 71 years, male 190.0
354_1 81 years, female 186.8
352_1 62 years, male 183.2
356_1 87 years, female 182.1
293_1 68 years, female 177.4
350_1 84 years, female 172.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 145.5
FF:10030-101E3 24-65 years, mixed 145.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.4
Mouse sample Sample description nTPM
Retina
nTPM: 382.4
Samples: 4

Max nTPM: 398.4
Min nTPM: 365.4
Sample A Male 398.4
Sample B Male 377.9
Sample C Female 365.4
Sample D Female 387.8

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