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MORF4L1
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:383.7 nTPM
FANTOM5:143.5 Scaled Tags Per Million
Mouse:585.1 nTPM
Allen mouse:6.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 297.6
2032 Female, age 42, unknown 312.1
2497 Male, age 66, unknown 291.3
2396 Male, age 61, right hemisphere 289.2
Centromedial thalamic nucleus
nTPM: 281.2
2401 Male, age 76, right hemisphere 375.7
2279 Female, age 85, left hemisphere 186.7
Habenula
nTPM: 383.7
2203 Male, age 61, left hemisphere 498.5
1957 Male, age 80, both hemispheres 431.3
2276 Male, age 66, unknown 317.7
2252 Male, age 62, unknown 287.3
Lateral geniculate body
nTPM: 377.6
2106 Female, age 67, right hemisphere 461.1
1953 Male, age 62, unknown 458.0
2399 Male, age 61, left hemisphere 427.8
2035 Female, age 72, unknown 376.4
2575 Female, age 94, right hemisphere 368.3
2841 Male, age 80, both hemispheres 322.9
2659 Male, age 66, unknown 311.5
2857 Male, age 74, right hemisphere 294.4
Lateral thalamic nuclei
nTPM: 326.7
2765 Female, age 67, both hemispheres 361.3
2573 Female, age 94, left hemisphere 356.2
1903 Male, age 76, left hemisphere 337.1
2577 Male, age 74, both hemispheres 305.9
2661 Female, age 72, unknown 272.9
Medial dorsal thalamic nucleus
nTPM: 335.7
2498 Male, age 66, unknown 402.5
2572 Female, age 94, right hemisphere 395.8
1971 Male, age 61, right hemisphere 376.5
2026 Male, age 62, unknown 355.8
1859 Male, age 76, both hemispheres 349.4
1810 Male, age 48, unknown 347.8
2039 Female, age 72, unknown 337.1
1930 Female, age 42, unknown 326.4
2283 Male, age 80, right hemisphere 316.1
2576 Male, age 74, both hemispheres 301.1
2402 Female, age 67, both hemispheres 287.2
2660 Female, age 72, unknown 285.1
2492 Male, age 75, right hemisphere 283.8
Medial geniculate body
nTPM: 311.6
1811 Female, age 42, unknown 417.5
2207 Male, age 80, right hemisphere 330.4
2650 Female, age 94, left hemisphere 321.8
2049 Male, age 76, both hemispheres 297.6
2657 Male, age 74, right hemisphere 285.6
2217 Female, age 72, unknown 273.0
2571 Male, age 75, right hemisphere 255.5
Nucleus reuniens
nTPM: 338.5
2212 Female, age 67, left hemisphere 413.9
2205 Male, age 80, left hemisphere 322.2
2210 Female, age 85, left hemisphere 279.4
Nucleus rhomboideus
nTPM: 316.0
2206 Male, age 80, both hemispheres 380.9
2213 Female, age 67, left hemisphere 294.6
2280 Female, age 85, left hemisphere 272.4
Posterior thalamic nucleus
nTPM: 310.8
2649 Female, age 94, both hemispheres 368.9
2266 Male, age 76, right hemisphere 321.6
2495 Female, age 67, right hemisphere 286.6
2655 Male, age 74, right hemisphere 266.0
Pulvinar
nTPM: 335.9
1932 Male, age 80, right hemisphere 404.3
2398 Male, age 61, left hemisphere 400.4
1972 Male, age 62, unknown 396.8
1929 Male, age 48, unknown 340.8
2724 Male, age 74, right hemisphere 340.4
2214 Male, age 76, right hemisphere 315.2
1899 Female, age 42, unknown 303.4
2582 Female, age 72, unknown 300.3
2499 Male, age 66, unknown 285.5
2496 Female, age 67, right hemisphere 272.0
Subthalamic nucleus
nTPM: 329.3
2124 Male, age 62, unknown 402.3
2282 Male, age 61, both hemispheres 383.6
2406 Female, age 72, unknown 360.2
2275 Male, age 66, unknown 357.5
2658 Male, age 74, both hemispheres 354.9
2779 Female, age 42, unknown 283.0
2216 Male, age 48, unknown 247.5
2056 Female, age 72, unknown 245.4
Ventral posterolateral thalamic nucleus
nTPM: 327.9
2397 Male, age 61, right hemisphere 369.1
2570 Male, age 75, right hemisphere 350.8
2578 Male, age 74, both hemispheres 345.9
2740 Male, age 76, right hemisphere 342.0
2197 Male, age 80, both hemispheres 326.0
2581 Female, age 72, unknown 233.2
Ventral posteromedial thalamic nucleus
nTPM: 313.4
2202 Male, age 61, left hemisphere 372.2
2653 Male, age 74, both hemispheres 333.1
2758 Male, age 80, both hemispheres 308.1
2281 Male, age 75, right hemisphere 302.2
2127 Male, age 76, right hemisphere 251.5
Ventral thalamic nuclei
nTPM: 335.2
1845 Male, age 48, unknown 407.2
1860 Male, age 76, both hemispheres 403.3
1912 Female, age 42, unknown 351.4
2580 Male, age 66, unknown 338.8
2204 Male, age 80, both hemispheres 334.2
2285 Male, age 62, unknown 315.2
2652 Male, age 74, left hemisphere 295.6
2858 Female, age 72, unknown 291.3
2291 Female, age 72, unknown 279.5
Zona incerta
nTPM: 317.7
2822 Male, age 74, right hemisphere 365.0
2215 Male, age 66, unknown 354.0
2208 Male, age 80, right hemisphere 302.3
2663 Female, age 72, unknown 287.6
2403 Male, age 62, unknown 279.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 143.5
FF:10154-103A1 76 years, female 143.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

585.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 585.1
Samples: 4

Max nTPM: 616.9
Min nTPM: 565.7
Sample A Male 586.2
Sample B Male 616.9
Sample C Female 571.4
Sample D Female 565.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 6.7
71763798 Antisense, RP_050921_02_F08, Mouse strain C57BL/6J (56 days, male) 6.7

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