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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:245.2 nTPM
HPA:150.1 nTPM
GTEx:245.2 nTPM
FANTOM5:239.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004810Antibody CAB017615
Glandular cells Not detectedNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.1
overview
Male, age 65
Small intestine sample 232
nTPM: 119.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 158.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 147.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 175.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 245.2
Samples: 187

Max nTPM: 738.0
Min nTPM: 83.9
Std nTPM: 112.6
Median nTPM: 214.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 738.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 677.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 605.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 550.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 531.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 501.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 495.4
GTEX-1192X-2526-SM-59868 50-59 years, male 491.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 475.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 462.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 448.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 445.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 445.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 429.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 426.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 426.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 418.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 411.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 407.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 390.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 387.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 386.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 383.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 381.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 380.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 377.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 362.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 358.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 354.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 354.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 351.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 349.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 349.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 349.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 330.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 326.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 323.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 315.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 313.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 312.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 308.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 308.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 305.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 304.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 294.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 292.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 286.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 283.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 282.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 281.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 281.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 281.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 279.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 278.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 276.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 274.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 273.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 269.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 267.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 266.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 266.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 264.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 263.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 262.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 262.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 260.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 260.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 259.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 258.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 256.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 255.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 253.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 253.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 251.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 251.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 250.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 250.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 246.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 245.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 243.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 242.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 242.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 234.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 231.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 227.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 226.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 224.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 223.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 217.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 216.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 215.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 215.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 214.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 214.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 213.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 213.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 212.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 209.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 208.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 207.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 207.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 207.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 206.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 205.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 205.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 204.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 203.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 201.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 201.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 199.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 198.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 195.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 194.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 192.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 191.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 191.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 191.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 190.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 186.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 186.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 184.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 184.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 183.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 183.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 182.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 180.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 176.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 176.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 175.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 172.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 168.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 167.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 166.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 166.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 165.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 165.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 165.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 165.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 165.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 159.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 157.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 156.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 156.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 155.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 155.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 155.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 154.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 152.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 151.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 148.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 147.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 147.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 146.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 146.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 145.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 144.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 144.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 144.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 143.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 141.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 140.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 139.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 139.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 138.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 138.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 137.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 137.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 136.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 135.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 134.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 134.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 132.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 130.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 129.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 129.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 129.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 129.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 125.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 125.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 122.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 120.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 110.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 108.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 100.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 98.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 97.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 83.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 239.3
FF:10024-101D6 15,40,85 years, mixed 239.3

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