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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:353.1 nTPM
GTEx:353.1 nTPM
FANTOM5:374.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004810Antibody CAB017615
Squamous epithelial cells LowNot detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 353.1
Samples: 156

Max nTPM: 1153.1
Min nTPM: 93.3
Std nTPM: 188.9
Median nTPM: 310.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1153.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1147.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 963.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 957.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 852.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 816.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 811.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 770.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 727.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 726.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 685.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 639.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 628.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 626.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 616.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 605.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 603.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 588.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 543.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 536.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 528.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 513.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 505.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 493.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 489.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 471.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 465.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 444.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 438.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 438.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 438.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 431.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 428.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 427.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 425.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 421.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 420.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 419.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 416.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 415.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 410.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 407.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 406.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 402.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 386.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 377.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 372.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 372.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 372.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 370.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 370.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 369.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 366.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 365.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 361.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 360.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 359.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 350.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 350.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 350.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 347.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 345.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 343.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 339.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 337.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 335.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 333.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 330.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 329.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 327.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 326.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 324.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 321.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 320.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 319.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 311.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 311.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 310.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 310.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 304.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 304.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 301.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 299.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 294.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 293.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 292.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 292.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 291.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 290.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 287.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 284.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 279.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 278.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 278.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 277.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 277.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 276.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 275.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 274.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 273.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 273.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 273.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 272.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 270.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 267.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 266.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 257.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 249.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 249.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 244.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 242.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 242.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 241.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 241.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 239.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 237.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 237.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 236.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 236.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 235.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 234.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 234.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 232.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 229.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 226.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 223.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 215.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 211.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 210.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 210.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 208.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 207.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 203.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 197.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 196.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 190.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 189.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 187.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 187.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 180.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 179.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 176.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 175.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 166.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 159.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 136.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 126.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 124.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 121.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 120.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 114.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 113.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 109.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 104.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 96.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 93.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 374.7
FF:10204-103F6 68 years, female 374.7

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